Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq64788 194 3e-44 seq177482 179 7e-40 seq125840 152 9e-32 >seq64788 Length=4825 Score = 194 bits (214), Expect = 3e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||||||||||||| || |||||||| ||||| || || |||||||| Sbjct 165 CCACCACGGAGACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAC 224 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| |||||||| |||||||| || | | ||| ||||| || ||| Sbjct 225 AAAGTACGGCCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGA 284 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || ||||| || || || || || |||||||| | || ||| ||| Sbjct 285 ATACCTTCCTTATCCTGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACT 344 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||||| || || | |||||| ||||| |||||||| Sbjct 345 TCCAAGGTGATGGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391 Score = 194 bits (214), Expect = 3e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || ||||| ||||| || || ||||| || |||||||| || || || ||| Sbjct 1133 CCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAG 1192 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || |||||||| |||||||| || | | ||||||||| || || Sbjct 1193 AGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGG 1252 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||| ||||| |||||||| || ||||| |||| || |||||| Sbjct 1253 ATACCTTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCTACC 1312 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||||||||| || | || || ||||| |||||||| Sbjct 1313 TCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || || |||||||| || || ||||||||||||||||| |||||||| Sbjct 1589 CCACCGCGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGAC 1648 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | |||||||| || || || || ||||| || | | ||||| || || ||| Sbjct 1649 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGA 1708 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| || || || || || || ||||| || | || ||| || Sbjct 1709 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACC 1768 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || ||||||||||| | || || |||||||| ||||| Sbjct 1769 TCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | ||||| || || || || |||||||| ||||| |||||||| Sbjct 2045 CCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAC 2104 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| | || || ||||| || || || | |||||| || || ||| Sbjct 2105 AAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGA 2164 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| |||||||| || |||||||| || || || || | || ||| || Sbjct 2165 ATGCCCTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACC 2224 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||||||||| || || || | ||||| ||||| || |||||| Sbjct 2225 TCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATT 2272 Score = 136 bits (150), Expect = 7e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || |||||||| || | || || |||||||| || || ||||| || | ||| | ||| Sbjct 1829 CGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCG 1888 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| || || || |||||||| || | | |||||| || || || || ||||||||| Sbjct 1889 TCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTG 1948 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 |||||||| || || || || || || || || | | || || |||||||||||| Sbjct 1949 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATG 2008 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || | |||||||| || || ||||| Sbjct 2009 GTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| |||||||| || ||||| || | | ||| || || || |||||||||||| Sbjct 6 CCATCTTCCAACTGCTTACCAGCGAAAATCAAACGTTGCTGATCCGGGGGAATGCCTTCC 65 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || || || ||||||||| || ||||| || | | ||||||||||| ||| Sbjct 66 TTATCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGCTCTACTTCCAATGTG 125 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || || | || || ||||| || ||||| Sbjct 126 ATAGTTTTGCCAGTCAAAGTTTTAACGAAGATTTGCAT 163 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||||||||| || || || ||||| ||||| || || |||||||| Sbjct 393 CCACCACGGAGACGCAATACCAAATGAAGAGTTGACTCCTTTTGAATATTGTAATCGGAT 452 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATAT 68332 || || | |||||||| |||||||| |||||||| || Sbjct 453 AGAGTGCGACCATCTTCCAACTGCTTACCGGCGAAGAT 490 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398 ||| || || || ||||| |||||||| ||||| || || ||||||||| || || || Sbjct 734 TTGCTGATCTGGGGGAATACCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCAATAGT 793 Query 68399 GTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458 || | | ||| || ||||||||||| ||||| || || | |||||| || || || || Sbjct 794 ATCAGAGGGTTCAACCTCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTCACAAAGATTTG 853 Query 68459 CAT 68461 ||| Sbjct 854 CAT 856 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398 ||| || || || ||||| |||||||| ||||| || || ||||||||| || || || Sbjct 1009 TTGCTGATCTGGGGGAATACCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCAATAGT 1068 Query 68399 GTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458 || | | ||| || ||||||||||| ||||| || || | |||||| || || || || Sbjct 1069 ATCAGAGGGTTCAACCTCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTCACAAAGATTTG 1128 Query 68459 CAT 68461 ||| Sbjct 1129 CAT 1131 >seq177482 Length=2829 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||||||||||||||| | || || |||||||| || || || ||||| Sbjct 1653 CCACCACGAAGGCGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAA 1594 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| || ||||| || || || || | | ||| || || |||||| Sbjct 1593 AGTGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGA 1534 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| |||||||| || ||||| ||||| ||||| | | ||| || Sbjct 1533 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGACC 1474 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||| ||||| ||||||||||||||||| Sbjct 1473 TCAAGAGTGATGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCAT 1427 >seq125840 Length=3442 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||| |||| ||||| || |||||||| || || ||||| Sbjct 764 CCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGAC 705 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| || || || |||||||| || | | |||||| || || ||| Sbjct 704 AAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 645 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| || || |||||||| || |||||||| | || ||| Sbjct 644 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACT 585 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| ||||| || || || | || |||||||| |||||||| Sbjct 584 TCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919347029497200