Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq177482 149 1e-30 seq125840 145 2e-29 seq64788 132 1e-25 >seq177482 Length=2829 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||| ||||||| || ||||| || ||||| ||||| ||||| || || Sbjct 1618 TTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATCTTCCAATTGCTTTCCAGCAAA 1559 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| || ||| ||| ||||||||||| ||||| || || ||||| || || Sbjct 1558 AATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATT 1499 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| || | ||| || || || ||||| ||||| || ||||| || ||||| Sbjct 1498 TTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTCAGGGTTTTGAC 1439 Query 288462 GAATATCTGCAT 288473 |||||||||||| Sbjct 1438 GAATATCTGCAT 1427 >seq125840 Length=3442 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||||| | ||| | ||| ||| ||||||||||| ||||||| Sbjct 764 CCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGAC 705 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| |||||||| || |||||||||| ||| ||||| ||||||| Sbjct 704 AAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTG---ATCTGGG 648 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || |||||||| || || || ||||| || | ||| | || Sbjct 647 GGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCG 588 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || || | ||| |||||||| |||||||| Sbjct 587 ACTTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538 >seq64788 Length=4825 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | | || | ||||| ||| ||| ||||||||||| ||||| | | Sbjct 1133 CCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAG 1192 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || || || || || || || |||||||||| ||| ||||| ||| Sbjct 1193 AGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTG---GTCTGGA 1249 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| ||||| ||||| || || || || ||||| || | ||| | |||| Sbjct 1250 GGGATACCTTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCT 1309 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| || || || |||| || || ||||| |||||||| Sbjct 1310 ACCTCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359 Score = 131 bits (144), Expect = 4e-25 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||||| | |||| || | ||||| || || ||||| || || || |||| Sbjct 1361 CCACCGCGGAGACGTAAG-ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGA 1419 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || ||||| ||||| |||||||| || |||||||| | ||| ||||| |||||| Sbjct 1420 CAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTG---ATCTGG 1476 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || ||||||||||| || ||||| || || || ||||| |||| ||| | ||| Sbjct 1477 GGGAATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTC 1536 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || || || |||| ||||| ||||| |||||||| Sbjct 1537 AACTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 127 bits (140), Expect = 5e-24 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||||| | |||| || | |||| || ||||||||||| || || |||| Sbjct 1589 CCACCGCGGAGACGTAAG-ACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGA 1647 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || ||||| ||||| |||||||| || ||||| || | ||||||||| |||||| Sbjct 1648 CAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTG---ATCTGG 1704 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || |||||||| || |||||||| ||||| || |||||||| | ||| | ||| Sbjct 1705 GGGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTC 1764 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || || || || || | || || |||||||| ||||| Sbjct 1765 GACCTCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||| || || | | ||||| |||||||| |||||||| || ||||| Sbjct 1852 TTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAA 1911 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| ||| |||||| ||||| ||||||||| || || || ||||| ||||| || Sbjct 1912 AATCAAACGTTGTTGA---TCTGGAGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAAC 1968 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| |||| |||| | || || || | ||||| || || || |||| ||||| Sbjct 1969 ATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTT 2028 Query 288459 GACGAATATCTGCAT 288473 ||| || || ||||| Sbjct 2029 GACAAAGATTTGCAT 2043 Score = 120 bits (132), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | ||||| || ||||||||| || || || |||| Sbjct 2045 CCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAC 2104 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||||||||||| | |||||| || || || || ||||| ||||| ||||||| Sbjct 2105 AAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTG---ATCTGGG 2161 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||| || ||||| || || || ||||| |||| ||| | ||| Sbjct 2162 GGAATGCCCTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCG 2221 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | ||||| ||||| || || | ||||| ||||| || |||||| Sbjct 2222 ACCTCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATT 2272 Score = 102 bits (112), Expect = 2e-16 Identities = 123/166 (74%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 288311 TGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---A 288367 |||| || ||||| || || || || ||||| |||| ||| || ||| || ||| | Sbjct 1 TGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGTTGCTGA---TCCGGGGGAA 57 Query 288368 TTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTT 288427 | ||||| |||||||||||||| || || |||||||| || | |||| | ||||||| Sbjct 58 TGCCTTCCTTATCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGCTCTACTT 117 Query 288428 CGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | | ||||| || || || |||| ||| || ||||| || ||||| Sbjct 118 CCAATGTGATAGTTTTGCCAGTCAAAGTTTTAACGAAGATTTGCAT 163 Score = 95.1 bits (104), Expect = 3e-14 Identities = 111/149 (74%), Gaps = 6/149 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | | || | ||||| ||| ||| ||||||||||| ||||| | | Sbjct 858 CCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAG 917 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || || || || || || || |||||||||| ||| ||||| ||| Sbjct 918 AGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTG---GTCTGGA 974 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGC 288392 ||||| ||||| ||||| ||||| || || Sbjct 975 GGGATACCTTCCTTATCTTGGATCTTAGC 1003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176669170261780