Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq177482 149 1e-30
seq125840 145 2e-29
seq64788 132 1e-25
>seq177482
Length=2829
Score = 149 bits (164), Expect = 1e-30
Identities = 148/192 (77%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||||||||| ||||| ||||||| || ||||| || ||||| ||||| ||||| || ||
Sbjct 1618 TTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATCTTCCAATTGCTTTCCAGCAAA 1559
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||| ||| || ||| ||| ||||||||||| ||||| || || ||||| || ||
Sbjct 1558 AATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATT 1499
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||| |||| || | ||| || || || ||||| ||||| || ||||| || |||||
Sbjct 1498 TTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTCAGGGTTTTGAC 1439
Query 288462 GAATATCTGCAT 288473
||||||||||||
Sbjct 1438 GAATATCTGCAT 1427
>seq125840
Length=3442
Score = 145 bits (160), Expect = 2e-29
Identities = 171/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||||| | ||| | ||| ||| ||||||||||| |||||||
Sbjct 764 CCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGAC 705
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || ||||| |||||||| || |||||||||| ||| ||||| |||||||
Sbjct 704 AAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTG---ATCTGGG 648
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| |||||||| || |||||||| || || || ||||| || | ||| | ||
Sbjct 647 GGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCG 588
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | || || ||||| || || | ||| |||||||| ||||||||
Sbjct 587 ACTTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538
>seq64788
Length=4825
Score = 132 bits (146), Expect = 1e-25
Identities = 168/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | | || | ||||| ||| ||| ||||||||||| ||||| | |
Sbjct 1133 CCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAG 1192
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| ||||| || || || || || || || |||||||||| ||| ||||| |||
Sbjct 1193 AGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTG---GTCTGGA 1249
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| ||||| ||||| ||||| || || || || ||||| || | ||| | ||||
Sbjct 1250 GGGATACCTTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCT 1309
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||| || || || |||| || || ||||| ||||||||
Sbjct 1310 ACCTCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359
Score = 131 bits (144), Expect = 4e-25
Identities = 170/231 (74%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
||||||||||| | |||| || | ||||| || || ||||| || || || ||||
Sbjct 1361 CCACCGCGGAGACGTAAG-ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGA 1419
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
| || ||||| ||||| |||||||| || |||||||| | ||| ||||| ||||||
Sbjct 1420 CAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTG---ATCTGG 1476
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
| || ||||||||||| || ||||| || || || ||||| |||| ||| | |||
Sbjct 1477 GGGAATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTC 1536
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | || || || || || |||| ||||| ||||| ||||||||
Sbjct 1537 AACTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587
Score = 127 bits (140), Expect = 5e-24
Identities = 169/231 (73%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
||||||||||| | |||| || | |||| || ||||||||||| || || ||||
Sbjct 1589 CCACCGCGGAGACGTAAG-ACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGA 1647
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
| || ||||| ||||| |||||||| || ||||| || | ||||||||| ||||||
Sbjct 1648 CAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTG---ATCTGG 1704
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
| || |||||||| || |||||||| ||||| || |||||||| | ||| | |||
Sbjct 1705 GGGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTC 1764
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | || || || || || || | || || |||||||| |||||
Sbjct 1765 GACCTCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815
Score = 127 bits (140), Expect = 5e-24
Identities = 146/195 (75%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||||||||| ||||| || || | | ||||| |||||||| |||||||| || |||||
Sbjct 1852 TTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAA 1911
Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||| ||| |||||| ||||| ||||||||| || || || ||||| ||||| ||
Sbjct 1912 AATCAAACGTTGTTGA---TCTGGAGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAAC 1968
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
||||| |||| |||| | || || || | ||||| || || || |||| |||||
Sbjct 1969 ATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTT 2028
Query 288459 GACGAATATCTGCAT 288473
||| || || |||||
Sbjct 2029 GACAAAGATTTGCAT 2043
Score = 120 bits (132), Expect = 7e-22
Identities = 166/231 (72%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || | ||||| || ||||||||| || || || ||||
Sbjct 2045 CCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAC 2104
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| |||||||||||||| | |||||| || || || || ||||| ||||| |||||||
Sbjct 2105 AAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTG---ATCTGGG 2161
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || ||||| || ||||| || || || ||||| |||| ||| | |||
Sbjct 2162 GGAATGCCCTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCG 2221
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || | ||||| ||||| || || | ||||| ||||| || ||||||
Sbjct 2222 ACCTCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATT 2272
Score = 102 bits (112), Expect = 2e-16
Identities = 123/166 (74%), Gaps = 6/166 (4%)
Strand=Plus/Plus
Query 288311 TGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---A 288367
|||| || ||||| || || || || ||||| |||| ||| || ||| || ||| |
Sbjct 1 TGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGTTGCTGA---TCCGGGGGAA 57
Query 288368 TTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTT 288427
| ||||| |||||||||||||| || || |||||||| || | |||| | |||||||
Sbjct 58 TGCCTTCCTTATCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGCTCTACTT 117
Query 288428 CGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| | ||||| || || || |||| ||| || ||||| || |||||
Sbjct 118 CCAATGTGATAGTTTTGCCAGTCAAAGTTTTAACGAAGATTTGCAT 163
Score = 95.1 bits (104), Expect = 3e-14
Identities = 111/149 (74%), Gaps = 6/149 (4%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | | || | ||||| ||| ||| ||||||||||| ||||| | |
Sbjct 858 CCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAG 917
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| ||||| || || || || || || || |||||||||| ||| ||||| |||
Sbjct 918 AGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTG---GTCTGGA 974
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGC 288392
||||| ||||| ||||| ||||| || ||
Sbjct 975 GGGATACCTTCCTTATCTTGGATCTTAGC 1003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1176669170261780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |