Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq41982 96.9 4e-15 seq195284 95.1 1e-14 >seq41982 Length=5201 Score = 96.9 bits (106), Expect = 4e-15 Identities = 238/356 (67%), Gaps = 15/356 (4%) Strand=Plus/Minus Query 114275 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 114334 ||||| ||| || || ||||| || ||||| | |||||| || ||||| | | |||| Sbjct 2643 AAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGACGTAGATTA 2584 Query 114335 GACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 114394 || || | || | || |||||||| || | || || | | || ||||||||| Sbjct 2583 GATTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGATTTTTG 2524 Query 114395 GTGACAACCTTTGTGAT-TTCATGAAGCTTTTCGTAATCAAAACTGCGA--GTCTCTTCA 114451 || | || || || | || | || |||| ||| | | ||| || | |||| Sbjct 2523 GTAATGACTTTAGTAACATTTTTTAA---TTTCTTAA-----AGT-CGAATGTTTTTTCA 2473 Query 114452 T---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 114508 | ||| || || |||||| ||||| |||| ||||||||| | ||||||| Sbjct 2472 GGCGTCACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGGGT 2413 Query 114509 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 114568 | | ||||||| ||||||||||||||| || | |||||| ||||| | || | Sbjct 2412 GCGGAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGC 2353 Query 114569 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 114624 || || ||| ||||| ||||||||||| | |||||| || || || || || Sbjct 2352 TGGTTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTC 2297 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 113896 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 113955 ||| | |||||||| | || || |||| || ||||| ||| ||||||| || Sbjct 3022 ATGATGATTGACAATATTGAATTCTCCCGATAGCACACGTCTGGTATAAATATTGGAGGT 2963 Query 113956 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGG 114015 || |||||||| | ||||| || ||||||||||| ||||| ||||| |||||||| || Sbjct 2962 ATAAGGCTCAAATGATTCATTATTGCCCAAGATTTGTGCGGTAGAGGCAGTGGGCATAGG 2903 Query 114016 TGCCA 114020 |||| Sbjct 2902 GGCCA 2898 >seq195284 Length=2243 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 11019 ||| || || || |||||||| ||||| | ||||| || ||||| || || | | | Sbjct 1381 ACCAACAGCATCGATTTCATCTATGAACAGAATACAAGGAGCATTTTTGCGTGCCATTGC 1440 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGC 11079 ||| ||||| || ||||| || ||| ||||| ||||||||||||| ||| | | | Sbjct 1441 AAACATATCACGCACTCTTGAGGGACCCACACCAACAAACATTTCCAAAAACTCTGATCC 1500 Query 11080 GGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11139 |||| || || || ||||| | ||| || ||| ||||| |||||| | || || Sbjct 1501 GGAAACCGTAATAAAAGGCACGTTAGCTTCTCCTGCGGTGGCTTTGGCGAGTAATGTTTT 1560 Query 11140 CCCCGTCCCAGG 11151 ||||| ||||| Sbjct 1561 ACCCGTGCCAGG 1572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595878808630800