Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq64788 100 3e-16 seq186851 95.1 1e-14 seq137565 93.3 5e-14 seq61366 93.3 5e-14 seq140220 91.5 2e-13 seq139936 91.5 2e-13 seq95733 91.5 2e-13 seq38282 91.5 2e-13 seq138662 89.7 6e-13 seq35688 89.7 6e-13 seq60626 87.8 2e-12 seq37893 87.8 2e-12 seq5851 87.8 2e-12 seq185244 86.0 7e-12 seq175424 84.2 2e-11 seq40071 84.2 2e-11 >seq64788 Length=4825 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| ||||| || | ||| ||||||||||||||||||||| | || ||| || | Sbjct 176 ACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCC 235 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | ||||||||| ||||| || | || |||||||| | || | | ||||| Sbjct 236 ATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTT 295 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| |||| | ||| | | | | ||||| | ||| || || | |||| Sbjct 296 ATCC-TGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGTGA 354 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||||||| || | ||||| || || || ||||| Sbjct 355 TGGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 ||||| || |||||||||||||| || ||||| ||||||||||||| || || ||| Sbjct 1826 AAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGC 1885 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 |||| || | || ||||| ||||| || | || || || || | || | | ||| Sbjct 1886 CCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCC 1945 Query 42111 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 42169 |||| | ||| |||| | ||| | | | | || ||| | || || || | || Sbjct 1946 TTGT-CTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGT 2004 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||||||||| || | ||||| |||||||||||||| Sbjct 2005 GATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || || |||||||| |||||||| | || ||| || |||| || Sbjct 2063 ACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCA 2122 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || || ||||| || || || || || || || || | || | || |||||| || || Sbjct 2123 AGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTTATCT-TG 2181 Query 42120 ATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | |||| | |||| | | | || || | ||| || || | |||||||| || Sbjct 2182 AATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGATGGTCTT 2241 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 ||| |||| ||||| || ||||||||||||||| Sbjct 2242 GCCAGTTAATGTCTTCACGAAGATTTGCATTTTC 2275 >seq186851 Length=1651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||||| |||||| || | | ||| |||||| ||||||||||||||||||||| | Sbjct 975 ATAAAAAAAATTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 1034 Query 57055 TACTCACCACTATACTACCGAGGAT 57079 ||||||||||||||||| ||||||| Sbjct 1035 TACTCACCACTATACTATCGAGGAT 1059 >seq137565 Length=1157 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 56998 AAAAATT---TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||||||| |||||| || | | ||| |||||| ||||||||||||||||||||| | Sbjct 929 AAAAATTGTATTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 870 Query 57055 TACTCACCACTATACTACCGAGGAT 57079 ||||||||||||||||| ||||||| Sbjct 869 TACTCACCACTATACTATCGAGGAT 845 >seq61366 Length=1478 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 |||| ||||| || | | ||| |||||| ||||||||||||||||||||| ||||||| Sbjct 681 AATTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCA 622 Query 57061 CCACTATACTACCGAGGAT 57079 ||||||||||| ||||||| Sbjct 621 CCACTATACTATCGAGGAT 603 >seq140220 Length=1645 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 185 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 126 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 125 ATACTATCGAGGATT 111 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 775 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 716 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 715 ATACTATCGAGGAT 702 >seq139936 Length=1620 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 185 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 126 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 125 ATACTATCGAGGATT 111 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 702 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 643 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 642 ATACTATCGAGGAT 629 >seq95733 Length=2222 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 970 AAAAAACATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 911 Query 57058 TCACCACTATACTACCGAGGATT 57080 |||||||||||||| |||||||| Sbjct 910 TCACCACTATACTATCGAGGATT 888 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 162 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 103 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 102 ATACTATCGAGGAT 89 >seq38282 Length=1633 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 133 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 74 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 73 ATACTATCGAGGATT 59 >seq138662 Length=2599 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 492 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 433 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 432 ATACTATCGAGGAT 419 >seq35688 Length=3808 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 3061 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 3120 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 3121 ATACTATCGAGGAT 3134 >seq60626 Length=1529 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1291 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1350 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 1351 TACTATCGAGGAT 1363 >seq37893 Length=2337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1306 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1365 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 1366 TACTATCGAGGAT 1378 >seq5851 Length=1034 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 149 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 90 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 89 TACTATCGAGGAT 77 >seq185244 Length=4071 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3531 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 3472 Query 57066 ATACTACCGAGGATTGAATATATAACTTGA 57095 |||||| ||||||| || | ||| |||| Sbjct 3471 ATACTATCGAGGATGTTATGTGTAATTTGA 3442 >seq175424 Length=1535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 906 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 847 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 846 ATACTATCGAGGAT 833 >seq40071 Length=1725 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1121 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1062 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 1061 ATACTATCGAGGAT 1048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541871675498400