Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq64788 136 4e-27
seq41982 120 3e-22
seq177482 98.7 1e-15
>seq64788
Length=4825
Score = 136 bits (150), Expect = 4e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || | ||||| || ||||||||||||||||||||||| | | ||||| |||||
Sbjct 2060 AGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCT 2119
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||| || || |||||| |||| || || || || || || ||||| || || || |||
Sbjct 2120 TCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTTATCT 2179
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| ||||| ||| ||| || | |||||| | || || |||| || | ||||
Sbjct 2180 TGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGATGGTC 2239
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||||| || || || || ||||| |||||||||||
Sbjct 2240 TTGCCAGTTAATGTCTTCACGAAGATTTGCATTTT 2274
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| ||||||||||| || |||||||| | | |||||| ||||||| | || || |||
Sbjct 1847 GTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTACCG 1906
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| |||| | || || || || ||||| |||||||| || ||||| | |||| |||||
Sbjct 1907 GCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTG-AATTTTAGCTTT 1965
Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
||| || | ||||| | || || || | || | ||| ||||| ||||| ||
Sbjct 1966 AACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAATGT 2025
Query 64426 TTTTACGAAAATTTGCAT 64443
|| || || ||||||||
Sbjct 2026 CTTGACAAAGATTTGCAT 2043
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| ||||| |||||||| ||||||||||| | | || || | ||||| | ||
Sbjct 1613 TGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCTTCCAATTGT 1672
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| || || |||| | ||||| || || || ||||| |||||||| ||||| | ||||
Sbjct 1673 TTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGA-TTTT 1731
Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
||||| ||| || | ||||| | || || |||| || | || || || ||
Sbjct 1732 AGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGTTTTTCCCGT 1791
Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443
|| ||||| ||||| ||||||||
Sbjct 1792 TAATGTTTTAACGAATATTTGCAT 1815
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATC-TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTG 64274
||| ||||| | | |||| || | ||||| || || || ||||||||||||||||| |
Sbjct 1360 ACCACCGCGGAGACGTAAG-ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGG 1418
Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334
| || || | ||||| | || || || || | || | || || || || || |
Sbjct 1419 ACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGG 1478
Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394
|||| |||||||| ||||| ||||| ||||||| || | || || | || |
Sbjct 1479 GAATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAA 1538
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||| || | || || || ||||| || || |||||||| |||||
Sbjct 1539 CTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587
>seq41982
Length=5201
Score = 120 bits (132), Expect = 3e-22
Identities = 522/811 (64%), Gaps = 31/811 (4%)
Strand=Plus/Minus
Query 154632 ACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTG 154691
|||||||| | ||||| |||||||| ||| ||||| | |||| ||| || ||
Sbjct 2400 ACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGCTGGTTACTCTTA 2341
Query 154692 ATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATA 154751
|| || || || |||||||| ||||| || || || ||||| ||||| | ||||||
Sbjct 2340 CGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTCTACTTGAGCTTCAATT 2281
Query 154752 ATTGTG--CGAAACAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTC---- 154805
|| | | ||| || || | |||| || || || | | ||| | ||
Sbjct 2280 ATGGCAAACCAAAGAGCCT--GGGCCTTGACGGTACG-GT---TTGCTTTGCCTTCATTT 2227
Query 154806 TCATA-TTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACA 154864
||||| ||| | |||| || ||| || || || | || ||| || ||| |||||
Sbjct 2226 TCATACTTGGTA-TACAATTCTTCGAATTCCGCACCCCAAACTTCCTGCAGACCAGGACA 2168
Query 154865 GCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATC 154924
|| ||||||||| || ||||| | | |||| || ||| | |||||||||||||||
Sbjct 2167 TTTGTGGGGACACATTAACGACCAATCTCCATTTTCTTCTACTCTTTTCATAAACAAATC 2108
Query 154925 CGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCG 154984
|| | ||||| || || || | ||| | || | | ||||| ||| | |||
Sbjct 2107 GGGTATCCACAGGGCATAGAATAGATCTCTAGCTCTGTGCTCTTCCTTGCCGGTATTTTT 2048
Query 154985 CTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGC 155044
|||||||| |||||| ||| | || || | ||||| ||||| ||||| | ||| | ||
Sbjct 2047 CTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATGGCAAATGC 1988
Query 155045 GCCTTTGCGTTT---TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAA 155101
||| ||||| || |||||||| || | || || ||| || |||| | |
Sbjct 1987 TCCTGGACGTTTGCCGCCGCCTTGATCTACATAGCGGGCAACATTGTTAAACACCCTAAG 1928
Query 155102 CAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACG 155161
|| || ||| || | | |||||||| || ||| || | |||| | | |
Sbjct 1927 CATGGGCACCAGTCCATTTGAGGTGCCGTTAGTACCATCGATGGAAGTGCC-CTTG---G 1872
Query 155162 CGCTT----TATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATAT--TTGCGCACA 155215
| ||| || || |||| ||| | ||| || | |||| || || | |||||
Sbjct 1871 CCCTTATGCAGTGCACGTTAATGCCAATACCACCAGCAGATTTGGAAATCATGGCGCATT 1812
Query 155216 GTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACA 155275
|| ||| | | | | || |||| || || | || ||||| | ||| ||
Sbjct 1811 GT--TCCACTGACTTGAAAATACCTTCAATAGAATCAGCCACCATGGTCAAAAGGAAGCA 1754
Query 155276 CGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAA 155335
||| || ||||| ||| | ||| | || ||||| || || || || ||||||||
Sbjct 1753 CGATGACAATTGTGGTCGCGGGGTAGCAGCAGCAAACAAAGTGGGCGAGGCATGTGTAAA 1694
Query 155336 CATTTTG-TTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTA 155394
|| | | | ||||| |||||||||||||| | || |||||| || ||||
Sbjct 1693 -ATAACGCTCAGACAACAAGTTATAAGTTTCGATGGCCGAATCTATGTCATCTCCATGTA 1635
Query 155395 TACCGATCGCCACGCGCATCAGCATGTGTTG 155425
|||| || || || | ||| | ||| || ||
Sbjct 1634 TACCTATAGCTACTCTCATTAACATATGCTG 1604
>seq177482
Length=2829
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| |||||||||||||| ||||| || | | ||||| | ||||| | ||||| ||
Sbjct 1623 GTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATCTTCCAATTGCTTTCCA 1564
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| |||| | || ||||| || || |||||||||||||| || || | | || |||||
Sbjct 1563 GCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTG-AATCTTGGCTTT 1505
Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
||| || | || || || || || || | ||| | |||||| || |||| ||
Sbjct 1504 GACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTCAGGGT 1445
Query 64426 TTTTACGAAAATTTGCAT 64443
||| ||||| || |||||
Sbjct 1444 TTTGACGAATATCTGCAT 1427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 498411239444400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |