Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq64788 136 4e-27 seq41982 120 3e-22 seq177482 98.7 1e-15 >seq64788 Length=4825 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || ||||||||||||||||||||||| | | ||||| ||||| Sbjct 2060 AGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCT 2119 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || || |||||| |||| || || || || || || ||||| || || || ||| Sbjct 2120 TCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTTATCT 2179 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | |||||| | || || |||| || | |||| Sbjct 2180 TGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGATGGTC 2239 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || || || || ||||| ||||||||||| Sbjct 2240 TTGCCAGTTAATGTCTTCACGAAGATTTGCATTTT 2274 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| || |||||||| | | |||||| ||||||| | || || ||| Sbjct 1847 GTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTACCG 1906 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | || || || || ||||| |||||||| || ||||| | |||| ||||| Sbjct 1907 GCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTG-AATTTTAGCTTT 1965 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||||| | || || || | || | ||| ||||| ||||| || Sbjct 1966 AACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAATGT 2025 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 2026 CTTGACAAAGATTTGCAT 2043 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||| |||||||| ||||||||||| | | || || | ||||| | || Sbjct 1613 TGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCTTCCAATTGT 1672 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || |||| | ||||| || || || ||||| |||||||| ||||| | |||| Sbjct 1673 TTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGA-TTTT 1731 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| || | ||||| | || || |||| || | || || || || Sbjct 1732 AGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGTTTTTCCCGT 1791 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| ||||| |||||||| Sbjct 1792 TAATGTTTTAACGAATATTTGCAT 1815 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATC-TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTG 64274 ||| ||||| | | |||| || | ||||| || || || ||||||||||||||||| | Sbjct 1360 ACCACCGCGGAGACGTAAG-ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGG 1418 Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | || || | ||||| | || || || || | || | || || || || || | Sbjct 1419 ACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGG 1478 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 |||| |||||||| ||||| ||||| ||||||| || | || || | || | Sbjct 1479 GAATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAA 1538 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | || || || ||||| || || |||||||| ||||| Sbjct 1539 CTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 >seq41982 Length=5201 Score = 120 bits (132), Expect = 3e-22 Identities = 522/811 (64%), Gaps = 31/811 (4%) Strand=Plus/Minus Query 154632 ACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTG 154691 |||||||| | ||||| |||||||| ||| ||||| | |||| ||| || || Sbjct 2400 ACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGCTGGTTACTCTTA 2341 Query 154692 ATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATA 154751 || || || || |||||||| ||||| || || || ||||| ||||| | |||||| Sbjct 2340 CGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTCTACTTGAGCTTCAATT 2281 Query 154752 ATTGTG--CGAAACAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTC---- 154805 || | | ||| || || | |||| || || || | | ||| | || Sbjct 2280 ATGGCAAACCAAAGAGCCT--GGGCCTTGACGGTACG-GT---TTGCTTTGCCTTCATTT 2227 Query 154806 TCATA-TTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACA 154864 ||||| ||| | |||| || ||| || || || | || ||| || ||| ||||| Sbjct 2226 TCATACTTGGTA-TACAATTCTTCGAATTCCGCACCCCAAACTTCCTGCAGACCAGGACA 2168 Query 154865 GCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATC 154924 || ||||||||| || ||||| | | |||| || ||| | ||||||||||||||| Sbjct 2167 TTTGTGGGGACACATTAACGACCAATCTCCATTTTCTTCTACTCTTTTCATAAACAAATC 2108 Query 154925 CGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCG 154984 || | ||||| || || || | ||| | || | | ||||| ||| | ||| Sbjct 2107 GGGTATCCACAGGGCATAGAATAGATCTCTAGCTCTGTGCTCTTCCTTGCCGGTATTTTT 2048 Query 154985 CTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGC 155044 |||||||| |||||| ||| | || || | ||||| ||||| ||||| | ||| | || Sbjct 2047 CTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATGGCAAATGC 1988 Query 155045 GCCTTTGCGTTT---TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAA 155101 ||| ||||| || |||||||| || | || || ||| || |||| | | Sbjct 1987 TCCTGGACGTTTGCCGCCGCCTTGATCTACATAGCGGGCAACATTGTTAAACACCCTAAG 1928 Query 155102 CAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACG 155161 || || ||| || | | |||||||| || ||| || | |||| | | | Sbjct 1927 CATGGGCACCAGTCCATTTGAGGTGCCGTTAGTACCATCGATGGAAGTGCC-CTTG---G 1872 Query 155162 CGCTT----TATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATAT--TTGCGCACA 155215 | ||| || || |||| ||| | ||| || | |||| || || | ||||| Sbjct 1871 CCCTTATGCAGTGCACGTTAATGCCAATACCACCAGCAGATTTGGAAATCATGGCGCATT 1812 Query 155216 GTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACA 155275 || ||| | | | | || |||| || || | || ||||| | ||| || Sbjct 1811 GT--TCCACTGACTTGAAAATACCTTCAATAGAATCAGCCACCATGGTCAAAAGGAAGCA 1754 Query 155276 CGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAA 155335 ||| || ||||| ||| | ||| | || ||||| || || || || |||||||| Sbjct 1753 CGATGACAATTGTGGTCGCGGGGTAGCAGCAGCAAACAAAGTGGGCGAGGCATGTGTAAA 1694 Query 155336 CATTTTG-TTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTA 155394 || | | | ||||| |||||||||||||| | || |||||| || |||| Sbjct 1693 -ATAACGCTCAGACAACAAGTTATAAGTTTCGATGGCCGAATCTATGTCATCTCCATGTA 1635 Query 155395 TACCGATCGCCACGCGCATCAGCATGTGTTG 155425 |||| || || || | ||| | ||| || || Sbjct 1634 TACCTATAGCTACTCTCATTAACATATGCTG 1604 >seq177482 Length=2829 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||||||||| ||||| || | | ||||| | ||||| | ||||| || Sbjct 1623 GTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATCTTCCAATTGCTTTCCA 1564 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || ||||| || || |||||||||||||| || || | | || ||||| Sbjct 1563 GCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTG-AATCTTGGCTTT 1505 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || || || || || || | ||| | |||||| || |||| || Sbjct 1504 GACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTCAGGGT 1445 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| ||||| || ||||| Sbjct 1444 TTTGACGAATATCTGCAT 1427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498411239444400