Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq64788 111 2e-19 seq125840 107 2e-18 >seq64788 Length=4825 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || ||||| | | | |||||||||||||||||||| ||| | Sbjct 1361 CCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1420 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||||||||| | |||||| ||| ||||| || || || Sbjct 1421 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGA 1480 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||||||||| || ||| |||| | |||| | ||| | ||||||| | || || Sbjct 1481 ATACCTTCTTTATC-TTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAAC 1539 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || |||| || || || ||||||||||| Sbjct 1540 TTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | |||||| || || || | | |||||||||||||| ||||| ||| Sbjct 164 GCCACCACGGAGACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGA 223 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| || || | || ||||||| |||| | ||| || ||||| || || Sbjct 224 CAAAGTACGGCCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGG 283 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| || || ||| |||| | ||||| | ||| | |||||| | | || | Sbjct 284 AATACCTTCCTTATC-CTGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAA 342 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||||| ||||||| || || || ||||||||||| Sbjct 343 CTTCCAAGGTGATGGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||||||| || || ||||| | | || || ||||| || ||||| || Sbjct 1816 GCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGA 1875 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| ||| || | ||||||||||| | || | ||| ||||| || ||||| Sbjct 1876 CAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGG 1935 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| |||| | ||||| | ||| | || |||| | ||| | Sbjct 1936 GATTCCTTCCTTGTC-TTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAA 1994 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| ||||||| || || ||||| || ||||| Sbjct 1995 CCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || || || | | | ||||| ||||| |||||||| ||| | Sbjct 1589 CCACCGCGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGAC 1648 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||||||||| | | |||| ||||||||| || || || Sbjct 1649 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGA 1708 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| |||||| ||| | | ||| | ||| || | | || ||| Sbjct 1709 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACC 1768 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||| || || | ||||| || || || |||||| Sbjct 1769 TCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCATG 1816 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || ||||| | | | || |||||||| || |||||||| Sbjct 1133 CCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAG 1192 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| | || ||||||| |||| | ||| |||||||| ||||| Sbjct 1193 AGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGG 1252 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| || || ||| || || | | ||| | ||| || | | || ||| Sbjct 1253 ATACCTTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCTACC 1312 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| ||||| || ||||||||||| Sbjct 1313 TCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359 >seq125840 Length=3442 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||||| | | || |||||||| || ||||||||| | Sbjct 764 CCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGAC 705 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||||||||||| |||| | ||| ||||| || || || Sbjct 704 AAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 645 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| |||||| || | | ||| | ||||||| | ||| || Sbjct 644 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACT 585 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| | |||||| || || |||||||| Sbjct 584 TCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495037190167200