Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq64788 161 7e-35 seq125840 100 2e-16 seq177482 98.7 7e-16 >seq64788 Length=4825 Score = 161 bits (178), Expect = 7e-35 Identities = 176/232 (76%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| ||||| | ||| || ||||| | ||||| ||||||||||| ||||||| | Sbjct 1815 TGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAAT--C 1872 Query 15008 TGAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || | | | ||||||| |||||||| || ||| | |||||||| ||||| || Sbjct 1873 AGACAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGG 1932 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 || |||||||||||||| |||||| ||| ||| |||| ||||||||| | || Sbjct 1933 AGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTC 1992 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| |||||||| || |||| || || ||||| ||||||||| Sbjct 1993 AACCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCATA 2044 Score = 152 bits (168), Expect = 4e-32 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || |||||||||||||| || ||||| |||||||||||| | Sbjct 1361 CCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCG--G 1418 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| |||||||| |||||| | || ||||| ||||| || | Sbjct 1419 ACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGG 1478 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| || || ||||||| |||||| |||| ||||| ||| ||| | Sbjct 1479 GAATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAA 1538 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||||||||| ||||| ||||||| || || || ||||| |||||| Sbjct 1539 CTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCATA 1588 Score = 141 bits (156), Expect = 7e-29 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || || |||||||| || |||||||| |||||||||||| | Sbjct 1589 CCACCGCGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCG--G 1646 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| |||||||| |||||| | || ||||||||||| || | Sbjct 1647 ACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGG 1706 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 |||| ||||| ||||| ||||| ||| ||| ||||||| ||||| | || ||| Sbjct 1707 GAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATC-CGATGGTTCG 1765 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| ||||| || || | ||||| || || |||||||| Sbjct 1766 ACCTCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 114 bits (126), Expect = 9e-21 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | || ||| |||||||| ||||| |||||||| |||||||||||| Sbjct 2045 CCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAC 2104 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||||| | |||||| || || | || | ||| ||||| || ||| Sbjct 2105 AAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGA 2164 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || |||||| || ||| |||| |||||||| ||| || Sbjct 2165 ATGCCCTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACC 2224 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 |||||||| ||||| || || || | || || || || |||||||| || || Sbjct 2225 TCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATTTTCGA 2277 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||||||||| || || ||||| || ||||| || ||| | | | || Sbjct 1148 AACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACCATCC 1207 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || || || || || ||| | |||||||| |||||||| || || |||||||| || Sbjct 1208 TCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTTATCT 1267 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || || || ||| |||| || ||||| |||||| || ||||| |||||| Sbjct 1268 TGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTGATGGTT 1327 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| ||||| || ||||| |||||| Sbjct 1328 TTTCCAGTCAACGTTTTCACGAAAATCTGCATA 1360 >seq125840 Length=3442 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| | ||| || || ||||| || ||||| ||| || || || | |||| Sbjct 746 ACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCG--GACAAGGTGCGACCATCTT 689 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | |||||||| || ||| | |||||||| ||||| || ||||| ||||| ||||| Sbjct 688 CCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTT 629 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||| || ||| |||| || || ||| | || || || ||||||||||| | Sbjct 628 GGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCT 569 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || | |||||| || || || ||||| Sbjct 568 TACCAGTTAAAGTTTTGACGAAGATCTGCAT 538 >seq177482 Length=2829 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 || || |||||||| || ||||| ||| || | | | ||||| ||||| || ||| Sbjct 1623 GTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATCTTCCAATTGCTTTCCA 1564 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTT 15099 || | |||||||| || || || |||||||||||| ||||| ||| ||| ||| Sbjct 1563 GCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 1504 Query 15100 ACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTT 15159 ||| |||| ||||| || ||| || || | || ||||| ||||| ||||| ||| Sbjct 1503 ACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTCAGGGTT 1444 Query 15160 TTTACAAAAATTTGCAT 15176 || || || || ||||| Sbjct 1443 TTGACGAATATCTGCAT 1427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356531702730350