Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq177482 118 1e-21 seq64788 116 4e-21 >seq177482 Length=2829 Score = 118 bits (130), Expect = 1e-21 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | ||||| ||||| || | || || ||||||||||||||||| ||| Sbjct 1656 GCACCACCACGAAGGCGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCG 1597 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | |||||| ||| || | || |||||||| | ||||| || |||||||| || Sbjct 1596 GAAAGTGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGT 1537 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || || || |||||| ||| | | |||| || | ||||| ||||||| || Sbjct 1536 GGAATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTC 1478 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 ||| || | || | || || || ||||| ||||| || || ||||||||||| Sbjct 1477 GACCTCAAGAGTGATGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCATGGC 1424 >seq64788 Length=4825 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| || | || ||||| |||||||||||||||||| | Sbjct 165 CCACCACGGAGACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAC 224 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||| || || ||| ||||||| || ||||| || || || Sbjct 225 AAAGTACGGCCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGA 284 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| ||| ||| || || | | ||| | |||||| | || || Sbjct 285 ATACCTTCCTTATCC-TGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAAC 343 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | |||||||| |||| || || || ||||||||||| Sbjct 344 TTCCAAGGTGATGGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||||||||||||| | || || || ||||| |||||||| || Sbjct 1133 CCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAG 1192 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||| || || ||| ||||||| || || || || ||||| Sbjct 1193 AGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGG 1252 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || ||| || ||||| | ||| | ||| || | || || Sbjct 1253 ATACCTTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCTACC 1312 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || |||| ||||| || ||||||||||| Sbjct 1313 TCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || || || |||||||| | ||||| |||||||| ||||||||||| | Sbjct 1817 CCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGAC 1876 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || | ||||| || ||| | ||||| || || ||||| ||||| Sbjct 1877 AATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGG 1936 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||| | ||| ||| || || | | ||| | || || | | ||| || Sbjct 1937 ATTCCTTCCTTGT-CTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAAC 1995 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | |||||||| |||| || || ||||| || ||||| Sbjct 1996 CTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || || |||||||| | |||||||| |||||||| ||||||||| | Sbjct 1361 CCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1420 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||||| |||||| |||| || || || ||||| || || Sbjct 1421 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGA 1480 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || || ||||| ||| | | ||| | ||||| | || ||| Sbjct 1481 ATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACT 1540 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || |||| || || || ||||||||||| Sbjct 1541 TCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || || ||||| || | || ||||||||||| || ||||||||| | Sbjct 1589 CCACCGCGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGAC 1648 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||||| |||||| | || || ||||| ||||| || || Sbjct 1649 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGA 1708 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| |||||| || | | ||| | ||| |||| ||||| Sbjct 1709 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACC 1768 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||||| || || | ||||| || || || |||||| Sbjct 1769 TCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCATG 1816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||||||||||||| | || || || ||||| |||||||| || Sbjct 858 CCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAG 917 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||| || || ||| ||||||| || || || || ||||| Sbjct 918 AGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGG 977 Query 127007 ATGCCCTCCTTGTC 127020 || || ||||| || Sbjct 978 ATACCTTCCTTATC 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474326847962400