Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq41982 93.3 5e-14 >seq41982 Length=5201 Score = 93.3 bits (102), Expect = 5e-14 Identities = 237/356 (67%), Gaps = 15/356 (4%) Strand=Plus/Minus Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295 ||||| ||| || || ||||| || ||||| | |||||| || ||||| | | |||| Sbjct 2643 AAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGACGTAGATTA 2584 Query 116296 GACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355 || || | || | || |||||||| || | || || | | || ||||||||| Sbjct 2583 GATTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGATTTTTG 2524 Query 116356 GTGACAACCTTTGTGAT-TTCATGAAGCTTTTCGTAATCAAAACTGCGA--GTCTCTTCA 116412 || | || || || | || | || |||| ||| | | ||| || | |||| Sbjct 2523 GTAATGACTTTAGTAACATTTTTTAA---TTTCTTAA-----AGT-CGAATGTTTTTTCA 2473 Query 116413 T---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 116469 | ||| || || |||||| ||||| |||| ||||||||| | ||||||| Sbjct 2472 GGCGTCACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGGGT 2413 Query 116470 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 116529 | | ||||||| ||||||||||||||| || | |||||| ||||| | || | Sbjct 2412 GCGGAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGC 2353 Query 116530 TGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 || || ||| ||||| ||||||||||| | ||| || || || || || || Sbjct 2352 TGGTTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTC 2297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611992527411600