Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq64788 132 1e-25 seq177482 100 7e-16 seq125840 93.3 1e-13 >seq64788 Length=4825 Score = 132 bits (146), Expect = 1e-25 Identities = 152/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||||||||| ||||||||||| | ||||| || | |||||| | |||||||||| ||| Sbjct 188 GTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCCATCTTCCAACTG 247 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| | ||| |||||||| || ||| ||||| |||||||| || Sbjct 248 CTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGAAT-TT 306 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | || || || ||| | |||||| | || ||| || ||||| ||||| || || || | Sbjct 307 TAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGTGATGGTTTTGCCAG 366 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | | || || || ||||| || Sbjct 367 TCAAGGTCTTAACGAAAATCTG 388 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || |||||||||| |||||||||| | || | ||||| |||| |||| Sbjct 1157 TGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACCATCCTCCAACTGC 1216 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||||||||| | ||| || ||||| ||| || ||||| || || ||||| Sbjct 1217 TTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGGATCTTA 1276 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | ||| |||| || |||||| ||||| ||||| || || || || Sbjct 1277 GCCTTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTGATGGTTTTTCCAGTC 1336 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | |||||||| ||||| || Sbjct 1337 AACGTTTTCACGAAAATCTG 1356 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| | ||| || |||||||| ||||||| |||||| || | ||| || | ||||||||| Sbjct 1606 GACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCTTC 1665 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 || || || || ||||| || | |||||| || || || ||| |||||| || || Sbjct 1666 CAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTG 1725 Query 199540 AATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCT 199598 || ||| || || || ||| | ||| || | || ||| || || || || || || | Sbjct 1726 GAT-TTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGTTT 1784 Query 199599 TACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| | ||||| || || ||||| Sbjct 1785 TTCCCGTTAATGTTTTAACGAATATTTG 1812 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || ||||||||||| | |||||| || | ||| || | ||||||||||| || Sbjct 1385 TGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGTCCATCTTCCAATTGT 1444 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || |||||||| | ||| || || || || ||| |||||| || ||||| || Sbjct 1445 TTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTATCTTGAATTTTG 1504 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | ||||| | || ||| || || || || || || || || || Sbjct 1505 GCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAATTGTTTTTCCTGTC 1564 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || || || ||||| || Sbjct 1565 AAGGTCTTAACGAAAATCTG 1584 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| ||||||||||||||||| | |||||| |||||||||| | || || Sbjct 262 ATCTTCGCCGGTAAGCAGTTGGAAGATGGCCGTACTTTGTCCGATTACAATATTCAAAAG 203 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||||| ||| | || ||| | || || Sbjct 202 GAGTCCACTCTCCACTTGGTATTGCGTCTCCG 171 >seq177482 Length=2829 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | || || || ||||| | |||||||| | | || Sbjct 1647 CGAAGGCGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTG 1588 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||||| || || || | ||| ||||| || || ||||||| Sbjct 1587 CGACCATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCT 1528 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| || || ||||| ||||| | | ||| || || | Sbjct 1527 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGA 1468 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||||||||| || ||||| || || || || Sbjct 1467 GTGATGGTCTTACCCGTCAGGGTTTTGACGAATATCTG 1430 >seq125840 Length=3442 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||||| |||||||| | ||| || | |||||||||| || || ||| Sbjct 734 GTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCG 675 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | ||| || || || || ||| |||||| || || || || ||| Sbjct 674 GCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTTG 615 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | |||||| | || || ||||| || || |||||||| || | |||| Sbjct 614 ACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGTT 555 Query 199613 TTCACAAAAATTTG 199626 || || || || || Sbjct 554 TTGACGAAGATCTG 541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175938224683170