Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq125840 125 5e-24
seq64788 125 5e-24
seq177482 111 1e-19
seq54036 82.4 5e-11
>seq125840
Length=3442
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| ||||||||||| || ||| ||| ||||| ||||| || |||| |
Sbjct 764 CCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGAC 705
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| ||| |||| ||||||||||| ||| | || || ||||| || ||||| | |||
Sbjct 704 AAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 645
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||||||||||| ||||| || | | | | ||||| || ||
Sbjct 644 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACT 585
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| ||||| || ||||| ||||||||||| ||||||||||||||
Sbjct 584 TCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538
>seq64788
Length=4825
Score = 125 bits (138), Expect = 5e-24
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|||||||| || || ||||||| ||| ||| |||| ||||||||||| || | |||
Sbjct 1625 TCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAA 1684
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
||||||||||| ||||| | ||| | ||||||||||| ||||| ||||| |
Sbjct 1685 ATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTT 1744
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
||| || || | ||| || || || ||||||||||| |||||||| ||||| |||
Sbjct 1745 TCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACG 1804
Query 39709 AAGATCTGCATG 39720
|| || ||||||
Sbjct 1805 AATATTTGCATG 1816
Score = 114 bits (126), Expect = 9e-21
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || |||||||| | |||||||||||| || ||||||||||||||| ||||| |
Sbjct 1816 GCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGA 1875
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| ||| | || ||||||||||| ||| | ||||| ||||| || ||||| | ||
Sbjct 1876 CAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGG 1935
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| ||||| ||||| ||||| ||||| | | | || || | || ||
Sbjct 1936 GATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAAC 1995
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| || || ||||| || || || || || || ||||| |||||
Sbjct 1996 CTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| | |||||||| | || || ||||| || || ||||||| |
Sbjct 1361 CCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1420
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| ||| |||| ||||||||||| || | || |||||||| || ||||| | |||
Sbjct 1421 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGA 1480
Query 39613 ACGCCTTCTTTGTCGCATATTTT-TTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| |||||||| || ||||| |||| || || || ||||| | ||| |
Sbjct 1481 ATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATA--GTGTCGGATGGTTCAA 1538
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || || ||||||||||| || || || || || ||||| ||||||||
Sbjct 1539 CTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587
>seq177482
Length=2829
Score = 111 bits (122), Expect = 1e-19
Identities = 159/222 (72%), Gaps = 4/222 (2%)
Strand=Plus/Minus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
|||| |||||| ||||| || ||||||||| ||||| || |||| | ||| ||
Sbjct 1641 CGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCA 1582
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| |||||||| || || ||||||| ||||| |||||||| | || | |||||||||
Sbjct 1581 TCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTG 1522
Query 39625 TC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682
|| | || || | | || ||| || ||||| | | ||| || || | ||| |
Sbjct 1521 TCCTGAATCTTGGCTTTGACATTTTCGATA--GTGTCCGAGGGTTCGACCTCAAGAGTGA 1464
Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGT 39724
| || |||||||| | ||||| ||||| ||||||||| |||
Sbjct 1463 TGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCATGGCGT 1422
>seq54036
Length=9543
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 42512 ATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGA 42571
||||| || |||||||| | ||||| | ||||||| ||| | || ||||| || |
Sbjct 1897 ATGTTGCCCAAATCACCTACATGTCTATTTTCATCACCAGGTGCACCATGTTCCTTGCCA 1956
Query 42572 AAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGT 42631
| || || |||||| |||||||||||| || || || || | || |||||||| ||
Sbjct 1957 CAGGGGTTGAAATGTGGACCAGCCGATGTGCAGCCGTTAGTATTGTCACCAAATTCGTGA 2016
Query 42632 ATATGAAAACCGTGATAACC 42651
| ||| ||||| || ||||
Sbjct 2017 ACATGGAAACCATGTAAACC 2036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346533428181830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |