Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq125840 125 5e-24 seq64788 125 5e-24 seq177482 111 1e-19 seq54036 82.4 5e-11 >seq125840 Length=3442 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||||||||| || ||| ||| ||||| ||||| || |||| | Sbjct 764 CCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGAC 705 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| ||||||||||| ||| | || || ||||| || ||||| | ||| Sbjct 704 AAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 645 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| || | | | | ||||| || || Sbjct 644 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACT 585 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| || ||||| ||||||||||| |||||||||||||| Sbjct 584 TCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538 >seq64788 Length=4825 Score = 125 bits (138), Expect = 5e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 |||||||| || || ||||||| ||| ||| |||| ||||||||||| || | ||| Sbjct 1625 TCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAA 1684 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 ||||||||||| ||||| | ||| | ||||||||||| ||||| ||||| | Sbjct 1685 ATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTT 1744 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 ||| || || | ||| || || || ||||||||||| |||||||| ||||| ||| Sbjct 1745 TCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACG 1804 Query 39709 AAGATCTGCATG 39720 || || |||||| Sbjct 1805 AATATTTGCATG 1816 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||||||| | |||||||||||| || ||||||||||||||| ||||| | Sbjct 1816 GCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGA 1875 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || ||||||||||| ||| | ||||| ||||| || ||||| | || Sbjct 1876 CAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGG 1935 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| ||||| ||||| | | | || || | || || Sbjct 1936 GATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAAC 1995 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| || || || || || || ||||| ||||| Sbjct 1996 CTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| | |||||||| | || || ||||| || || ||||||| | Sbjct 1361 CCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1420 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| ||||||||||| || | || |||||||| || ||||| | ||| Sbjct 1421 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGA 1480 Query 39613 ACGCCTTCTTTGTCGCATATTTT-TTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||||| || ||||| |||| || || || ||||| | ||| | Sbjct 1481 ATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATA--GTGTCGGATGGTTCAA 1538 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || ||||||||||| || || || || || ||||| |||||||| Sbjct 1539 CTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 >seq177482 Length=2829 Score = 111 bits (122), Expect = 1e-19 Identities = 159/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| |||||| ||||| || ||||||||| ||||| || |||| | ||| || Sbjct 1641 CGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCA 1582 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||||||| || || ||||||| ||||| |||||||| | || | ||||||||| Sbjct 1581 TCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTG 1522 Query 39625 TC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 || | || || | | || ||| || ||||| | | ||| || || | ||| | Sbjct 1521 TCCTGAATCTTGGCTTTGACATTTTCGATA--GTGTCCGAGGGTTCGACCTCAAGAGTGA 1464 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGT 39724 | || |||||||| | ||||| ||||| ||||||||| ||| Sbjct 1463 TGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCATGGCGT 1422 >seq54036 Length=9543 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 42512 ATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGA 42571 ||||| || |||||||| | ||||| | ||||||| ||| | || ||||| || | Sbjct 1897 ATGTTGCCCAAATCACCTACATGTCTATTTTCATCACCAGGTGCACCATGTTCCTTGCCA 1956 Query 42572 AAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGT 42631 | || || |||||| |||||||||||| || || || || | || |||||||| || Sbjct 1957 CAGGGGTTGAAATGTGGACCAGCCGATGTGCAGCCGTTAGTATTGTCACCAAATTCGTGA 2016 Query 42632 ATATGAAAACCGTGATAACC 42651 | ||| ||||| || |||| Sbjct 2017 ACATGGAAACCATGTAAACC 2036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346533428181830