Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq91934 206 3e-48 seq64788 116 4e-21 seq125840 114 1e-20 >seq91934 Length=4437 Score = 206 bits (228), Expect = 3e-48 Identities = 468/701 (67%), Gaps = 6/701 (1%) Strand=Plus/Minus Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC 132789 || || || || || || |||| |||||| || ||||| | || | || | || Sbjct 3564 TCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAATCAAATTGACG 3505 Query 132790 GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTA 132849 |||| |||||||| | || ||| || || || || || || | ||||| | Sbjct 3504 GGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTATTATTTCGGTT 3445 Query 132850 ACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAA 132909 | | | | ||| || ||||| | ||||| || ||||| || |||||| || ||| Sbjct 3444 ATTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAACACAGCAAAATCACAA 3385 Query 132910 TGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCG 132969 || || |||||||| | ||||| | || ||| ||| || | ||| ||||| || || Sbjct 3384 TGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAGGCATAAGACCA 3325 Query 132970 CGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCC 133029 ||||| || ||||||||||| | || |||||||| ||||| | |||||| || || Sbjct 3324 CGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAAGAAAATGCCCTCCACAGCG 3265 Query 133030 GCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCC 133089 || || || | | ||| || || || |||| ||| | | ||||| || ||| Sbjct 3264 GCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTTGAGCCAATCCAAGACATTGCC 3205 Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA---AACGGAGT 133146 || |||||||| || || ||||||||||| ||||| || || | || | || Sbjct 3204 CAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAGAGATAATCGCGT 3145 Query 133147 TTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACG 133206 | || ||| | |||| ||||||| | | ||||||||| |||||||| Sbjct 3144 TGTTC--GCGA-TCTTTAATGTAGCTGTCGATCAAAATACTATACATTTCAGAGTGTACA 3088 Query 133207 TTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGA 133266 || |||||||| ||||| || || || || || || ||||| || || || ||||| Sbjct 3087 TTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACTTGTACCTCTTGG 3028 Query 133267 GCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGC 133326 | ||||| || || |||||||| ||||| || || ||| || || || |||||||| Sbjct 3027 GAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCAGCAAAGAAGGCCAGA 2968 Query 133327 ACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTG 133386 || || ||| || | ||||| |||||| | | |||||||| | || || Sbjct 2967 ACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAGTCCGAATTATCTTTA 2908 Query 133387 GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 || || || || || || || |||||||| || || || || Sbjct 2907 GAGAGATCTACTTCTTCTACAGTCCAAAAAGATGCTTCAGC 2867 >seq64788 Length=4825 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| ||||| | ||||| ||||| || || | || ||||| | | Sbjct 1815 ATGCAAATATTCGTTAAAACATTAACGGGAAAAACAATTACATTAGAGGTCGAACCATCG 1756 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| |||||| ||||||| |||||||| || |||||| | || ||| Sbjct 1755 GATACCATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 1696 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| || ||||| |||| || | || || | ||| |||||| Sbjct 1695 CAGCGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 1636 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||| || |||| || || ||||| Sbjct 1635 ATCCAAAAAGAGTCGACCCTTCACTTGGT 1607 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| |||||| | || || |||||||||||| | || || || | | Sbjct 1359 ATGCAGATTTTCGTGAAAACGTTGACTGGAAAAACCATCACCTTGGAGGTAGAACCATCA 1300 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | || |||| || || || || || || | |||||| Sbjct 1299 GATACCATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCTCCAGACCAA 1240 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || || ||| |||| || | ||||||||| |||||||| Sbjct 1239 CAACGTTTGATCTTCGCCGGTAAGCAGTTGGAGGATGGTCGCACCCTCTCTGACTACAAT 1180 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||||||||| ||||| Sbjct 1179 ATCCAAAAGGAATCCACCCTTCATTTGGTGTTGCGT 1144 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||||||||||||| | || || ||| | || Sbjct 2043 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCTTCC 1984 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||||| ||||| | ||||| || ||||| || | || ||| Sbjct 1983 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCAA 1924 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||| || ||||| |||| |||| |||||| | || ||||| Sbjct 1923 CAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 1864 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||| ||| | || |||||||||| | |||||| | || ||| Sbjct 1863 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGGC 1816 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||||||||||||| | || || || | | Sbjct 391 ATGCAGATTTTCGTTAAGACCTTGACTGGCAAAACCATCACCTTGGAAGTTGAACCATCT 332 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| |||||| ||||| | || || || || |||||| | ||||| Sbjct 331 GACACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAGGAAGGTATTCCCCCAGACCAG 272 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || || ||| |||| || | || || | ||| ||||| Sbjct 271 CAACGTTTGATCTTCGCCGGTAAGCAGTTGGAAGATGGCCGTACTTTGTCCGATTACAAT 212 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || |||||||| | || || || ||||| ||||| Sbjct 211 ATTCAAAAGGAGTCCACTCTCCACTTGGTATTGCGT 176 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || || || || || | |||||||| || | || | ||| || || Sbjct 1000 AAGATCCAAGATAAGGAAGGTATCCCTCCAGACCAACAACGTTTGATCTTCGCCGGTAAG 941 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||| |||| || | ||||||||| |||||||| |||||||||||| | || || ||| Sbjct 940 CAGTTGGAGGATGGTCGCACCCTCTCTGACTACAATATCCAAAAGGAATCCACCCTTCAT 881 Query 38448 TTGGTGCTGCGT 38459 |||||| ||||| Sbjct 880 TTGGTGTTGCGT 869 >seq125840 Length=3442 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || || ||||| ||| | || |||||| | | Sbjct 538 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTCGAGCCTTAC 597 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||||| |||||||| || |||||| | || ||| Sbjct 598 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 657 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || ||||| |||| || | |||||| | ||||||||| Sbjct 658 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAT 717 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || | |||||||| || ||| Sbjct 718 ATCCAAAAGGAATCCACCTTACATTTGGTACTCCGT 753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498937935878400