Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq91934 86.0 8e-12 seq195284 82.4 9e-11 >seq91934 Length=4437 Score = 86.0 bits (94), Expect = 8e-12 Identities = 325/504 (64%), Gaps = 12/504 (2%) Strand=Plus/Plus Query 101816 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGAT--TTGGACGATTGGAAGACTCTAAAT 101873 |||||||| ||||| ||||||||||| || ||| || | || ||| | | || | Sbjct 2881 TTGGACTGTAGAAGAAGTAGATCTCTCTAAAGATAATTCG--GACTGGGAAAAACTCACC 2938 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 || ||||| | || || | | | ||||| |||||||||| |||||||| ||| Sbjct 2939 GACAATGAGCGTTACTTTATCTCACATGTTCTGGCCTTCTTTGCTGCTTCCGATGGTATT 2998 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCT 101993 || ||| ||| | | | ||| | | ||||| ||| | || || | | | Sbjct 2999 GTCAATGAAAATCTTGTTGAACGTTTTTCCCAAGAGGTACAAGTTACAGAGGCACGCTGT 3058 Query 101994 TTCTATGCGTATCAA--TGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||||||| | ||| || ||| |||| || || || | || |||| | | Sbjct 3059 TTCTATGGTTTCCAAATTGCCATG--GAAAATGTACACTCTGAAATGTATAGTATTTTGA 3116 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAG 102111 | |||| || ||||| ||| | | | | | |||||| | ||||| |||| Sbjct 3117 TCGACAGCTACATTAAAGATCGCGAACAACGCGATTATCTCTTTAATGCCATTGAAACGA 3176 Query 102112 TTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT 102171 | ||| | || | || || |||||||| ||| ||| ||| |||| ||| Sbjct 3177 TGCCAGCTGTTAAGCGCAAGGCCGATTGGGCAATGTCTTGGATTGGCTCAAAATCGGCCA 3236 Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| ||| || | | |||||||| ||| ||||| || |||||| ||| | Sbjct 3237 ATTTTGGTGAACGCATTATTGCATTTGCCGCTGTGGAGGGCATTTTCTTCAGTGGCAGTT 3296 Query 102232 T--CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 | || || ||||| ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 3297 TTGCTTCGATATTT--TGGCTAAAGAAACGTGGTCTTATGCCTGGCCTTACATTCTCCAA 3354 Query 102290 CGAGCTTATCTCTCGTGACGAGGG 102313 ||| | || |||||||||||||| Sbjct 3355 TGAGTTGATTTCTCGTGACGAGGG 3378 >seq195284 Length=2243 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||| ||||| | || || || ||||| ||| || | | || Sbjct 1382 CCAACAGCATCGATTTCATCTATGAACAGAATACAAGGAGCATTTTTGCGTGCCATTGCA 1441 Query 16119 AAGAGATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 || | ||| || ||| |||| | ||||||||||||||||| |||| ||| | || Sbjct 1442 AACATATCACG--CACTCTTGAGGGACCCACACCAACAAACATTTCCAAAAACTCTGATC 1499 Query 16177 CGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 16236 ||||| || || || || |||| ||| || || ||||| |||||| | || | Sbjct 1500 CGGAAACCGTAATAAAAGGCACGTTAGCTTCTCCTGCGGTGGCTTTGGCGAGTAATGTTT 1559 Query 16237 TACCCGTACCTGG 16249 ||||||| || || Sbjct 1560 TACCCGTGCCAGG 1572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619209864607200