Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq41982 125 8e-24 seq195284 102 1e-16 seq154177 91.5 2e-13 >seq41982 Length=5201 Score = 125 bits (138), Expect = 8e-24 Identities = 243/355 (68%), Gaps = 13/355 (4%) Strand=Plus/Minus Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327 ||||| ||| || || ||||| || ||||| | |||||||| | || || | |||| Sbjct 2643 AAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGACGTAGATTA 2584 Query 106328 GACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 106387 || || | || | | |||||||| || |||| |||| | ||| ||||||||| Sbjct 2583 GATTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGATTTTTG 2524 Query 106388 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGA--GTCTCTTCAT 106445 |||| | || || | ||| ||||| || ||||| ||| || | |||| Sbjct 2523 GTAATGACTTTAGTAA---CAT----TTTTTAATTTCTTAAAGT-CGAATGTTTTTTCAG 2472 Query 106446 ---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTAT 106502 | ||| || | |||||| ||||| |||||||| || || || ||||||| Sbjct 2471 GCGTCACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGGGTG 2412 Query 106503 CTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTT 106562 | | ||||||| |||||| ||||||||||| | |||||| || || | ||| | | Sbjct 2411 CGGAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGCT 2352 Query 106563 GGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 |||||||||| || || ||||||||||| | ||||||||| || || || || Sbjct 2351 GGTTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTC 2297 >seq195284 Length=2243 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 9366 CCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 9425 || || ||||| || ||||| ||||| | |||||| || ||||| ||| || ||| || Sbjct 1382 CCAACAGCATCGATTTCATCTATGAACAGAATACAAGGAGCATTTTTGCGTGCCATTGCA 1441 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 || | ||| || || ||| || ||||||||||||||||| |||| ||| | || || Sbjct 1442 AACATATCACGCACTCTTGAGGGACCCACACCAACAAACATTTCCAAAAACTCTGATCCG 1501 Query 9486 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9545 ||| || || || || |||| ||| || || ||||| |||||| | || ||| Sbjct 1502 GAAACCGTAATAAAAGGCACGTTAGCTTCTCCTGCGGTGGCTTTGGCGAGTAATGTTTTA 1561 Query 9546 CCCGTACCTGG 9556 ||||| || || Sbjct 1562 CCCGTGCCAGG 1572 >seq154177 Length=6269 Score = 91.5 bits (100), Expect = 2e-13 Identities = 237/358 (66%), Gaps = 9/358 (3%) Strand=Plus/Plus Query 169182 AGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAG 169241 ||||| ||||||||||||||||| | ||| ||||||||| ||||| | ||||| Sbjct 3178 AGACCTTTGATGTGAGAACCATCCTGATCCTGATCTGTCATGATCATTACTTTGCCATAA 3237 Query 169242 CG--AAGT-TCAGAAACATC--TTGGTAGTCTTTTCCTTGT----TGAAGACCCAAGATC 169292 || |||| | | | |||| | | || |||| || | || ||||| | ||| Sbjct 3238 CGTAAAGTCTTAATATCATCCATCGAAAGATATTTCTTTTTATACTGCAGACCTATGATT 3297 Query 169293 TTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACA 169352 || |||| |||| || ||| | ||||| | | || || || ||| Sbjct 3298 TTGCACAGATTATTGATTTCGGCATTTTCAGCCAGCTGCTTAAAGGTGGCTTCACGTACA 3357 Query 169353 TTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGA 169412 ||| | || ||||| | |||||||||||||||| || ||| || | || ||| Sbjct 3358 TTCAACAATTTACCACGCAAAGGAAAGACGCCATAGAAATTACGGCCTATAACACCCAGA 3417 Query 169413 CCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCA 169472 |||| || || | | ||| ||||| || ||||| |||| ||| | || ||| | | Sbjct 3418 CCCGACACAGCCAAAGATTTAGCTGAGTCTCCCTCGGTGAGAATCAAAGTGCACATGTAA 3477 Query 169473 GATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTGG 169530 || | | ||||| |||| ||| || || ||||| ||||| ||||| | ||||||| Sbjct 3478 GAGTTCTTGGTACCGGCCTCGTTGGCATCTTCCAATTTGGGTATACCCTTTATTTTGG 3535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588524211152400