Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq14118 150 2e-31 >seq14118 Length=4545 Score = 150 bits (166), Expect = 2e-31 Identities = 358/524 (68%), Gaps = 24/524 (5%) Strand=Plus/Minus Query 159268 TTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGT 159327 || ||||| |||||||| | |||| || ||||| ||||| || | || | ||||| Sbjct 1883 TTGTGTGAGATCACAGGATATGATAAAATTTCATTCCAACCGAATTCTGGTGCTCAGGGA 1824 Query 159328 GAGTATGCAGGACTGTTAGCAATCCAAGCA--TACCATCAAGGATCAGGA-GATGATAAA 159384 ||||| ||||| ||| ||| || | ||| |||||| || | | | || | | | Sbjct 1823 GAGTACGCAGGTCTGAGAGCTATTC--GCAGTTACCATGAAC-ACCGCAATGAGGGTCAC 1767 Query 159385 AGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATG 159444 | || | ||| | || || || || |||||||| |||||||||||||| |||| Sbjct 1766 CGCAACATTTGTCTAATTCCTATTTCTGCCCATGGAACCAATCCTGCATCAGCTCAGATG 1707 Query 159445 GCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT----GATGGCAACATAGACATCAA 159500 ||||| |||||||||| | ||| | || | ||||| | ||| || || Sbjct 1706 GCAGGTATGAAAGTTGAAC----CAATTCGCATACTTCCCGATGGAAGCATTGATATGGC 1651 Query 159501 AGATCTAGAGAAGAAAGCAATCATGAATACATTTGAACT--GTCATGTATTATGATTACA 159558 | || | || ||| ||| ||| || | | | | ||| || | ||||| ||| Sbjct 1650 CCACTTACGTGATAAGGCA-TCA-GAACACGCTCGTAATTTGTCGTGCTTAATGATCACA 1593 Query 159559 TATCCATCTACACATGG-TGTATTTGAAACAAACATCAGACAGATATGTAAGAT-TG-TT 159615 ||||| ||||| ||||| |||||| ||| |||| | | | || || | ||| || || Sbjct 1592 TATCCCTCTAC-CATGGGTGTATTCGAAG-AAAC-TGTGGCCGAAATTTGCGATCTGATT 1536 Query 159616 CATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTA 159675 ||| | |||||||||| || ||||| ||||| || ||| | ||||| ||||| ||||| Sbjct 1535 CATAGGCATGGTGGTCAAGTGTATCTAGATGGCGCCAATATGAATGCTCAGGTCGGTCTG 1476 Query 159676 GCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGT 159735 ||| |||||||||| ||||| | ||| |||| | || || || |||||| Sbjct 1475 TGTCGTCCAGGTGACTATGGCAGTGATGTGTCCCATTTAAATCTGCACAAAACTTTCTGT 1416 Query 159736 ATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| ||||| ||||| ||||| || | ||||| ||||| || Sbjct 1415 ATTCCTCATGGTGGTGGCGGTCCCGGTATGGGTCCAATTGGCGT 1372 Score = 84.2 bits (92), Expect = 3e-11 Identities = 215/324 (66%), Gaps = 5/324 (2%) Strand=Plus/Minus Query 158392 TTGATGCAACCTGTAGGTGAGTGGGGATTTGACATTGCTGTAGGTAGTATGCAAAGGTTT 158451 |||| || ||||| || ||| || ||| || || ||||| | | ||| | | Sbjct 2786 TTGAGGCCACCTGCAG---AGTTCGGTGCTGATATGGCAGTAGGCACTTCACAACGTCTC 2730 Query 158452 GGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTAT 158511 ||| ||||| | || || ||||| ||||| |||| || || || | || |||| | Sbjct 2729 GGTGTTCCTCTTGGTTATGGAGGACCTCACGCTGGCTTTTTCGCCTGCA-AGCAAAGTTT 2671 Query 158512 AA-GAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAAGC 158570 | | | ||| ||||| |||| ||||| | ||||| || || ||| | || Sbjct 2670 AGTGCGTCTGATGCCTGGTCGAATGATAGGTGTAACGAGAGATATGGACGGCAATGATGC 2611 Query 158571 ATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAA 158630 ||| | | ||| | || ||| | || || ||||| | ||||| || || || ||||| Sbjct 2610 ATATCGTCTCGCATTGCAAACTCGTGAACAACATATTCGTAGAGATAAGGCCACAAGTAA 2551 Query 158631 CATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGG 158690 || || || |||||||| | || ||||||||||||| | | || ||| || ||||| Sbjct 2550 TATTTGTACTGCACAAGCTTTACTCGCTAATATGTCTGCGATGTACGCAATTTACCATGG 2491 Query 158691 TGCAGATGGACTACATGCTATAGC 158714 |||| || || | ||||| || Sbjct 2490 CCCAGAAGGTCTTAAAGCTATTGC 2467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586599375093600