Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq64788 165 2e-35 seq125840 159 8e-34 seq177482 136 9e-27 >seq64788 Length=4825 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| ||||||||||| ||||||||||||||||||| | ||| | Sbjct 173 GAGACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACG 232 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | ||||||||| |||||||| | ||||| |||||||| ||||| ||||| Sbjct 233 GCCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTC 292 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || |||||||| || || || ||||||||||| || ||| ||||| | ||| Sbjct 293 CTTATCCTGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGT 352 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||| || || ||||| | ||||| Sbjct 353 GATGGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| |||||||| |||||||||| | || | |||||||| | || Sbjct 1385 TGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGTCCATCTTCCAATTGT 1444 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| |||||||| | |||||||| ||||| ||||| |||||||| ||||||||||| Sbjct 1445 TTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTATCTTGAATTTTG 1504 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || ||||| ||||| || ||| ||||| | ||||| || ||||||||| Sbjct 1505 GCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAATTGTTTTTCCTGTC 1564 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 1565 AAGGTCTTAACGAAAATCTGCAT 1587 Score = 149 bits (164), Expect = 1e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || ||||||||||| |||||||||| | ||| | || ||||| || || Sbjct 2069 TGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCAAGTTGT 2128 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || || |||||||| ||||| |||||||| || || ||||||||||| Sbjct 2129 TTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTTATCTTGAATTTTA 2188 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || ||||| || || || ||| || || | ||| | ||||| || || Sbjct 2189 GCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGATGGTCTTGCCAGTT 2248 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 || || || ||||| | |||||||| Sbjct 2249 AATGTCTTCACGAAGATTTGCATTT 2273 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||||| ||||| || ||||| |||||||| || | || || | Sbjct 1141 GAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCG 1200 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| || | ||||||||| |||||||| | ||||||||||||||||| || ||||| Sbjct 1201 ACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTC 1260 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || ||||| || || |||||| || |||||||| || || ||| || || | ||| Sbjct 1261 CTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGT 1320 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| ||||| ||||| ||||| | ||||| Sbjct 1321 GATGGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | |||||| || ||||||||||| || |||||||||| | || | |||||| Sbjct 1604 AAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCT 1663 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | || ||||| ||||| || | || ||||| ||||| ||||| |||||||||||| Sbjct 1664 TCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCT 1723 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || ||||| || || || || ||||| ||||| ||| || || | |||| || Sbjct 1724 TGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGTT 1783 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || ||||| ||||| | |||||| Sbjct 1784 TTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||||||||| ||||| || | ||||| || || || ||||||||||| Sbjct 6 CCATCTTCCAACTGCTTACCAGCGAAAATCAAACGTTGCTGATCCGGGGGAATGCCTTCC 65 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || ||||| ||||||||| |||||||| || ||| || ||||| | || Sbjct 66 TTATCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGCTCTACTTCCAATGTG 125 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||||||||| ||||| | |||||| Sbjct 126 ATAGTTTTGCCAGTCAAAGTTTTAACGAAGATTTGCAT 163 Score = 116 bits (128), Expect = 8e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || |||||||| ||||||||||| | | || | ||| ||||| | || ||||| Sbjct 1847 GTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTACCG 1906 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | |||||||| |||||||| || ||||| |||||||||||||| || Sbjct 1907 GCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTA 1966 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| || || ||| || || || | ||| | || || || ||||| || Sbjct 1967 ACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAATGTC 2026 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 2027 TTGACAAAGATTTGCAT 2043 Score = 104 bits (114), Expect = 5e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||||| ||||| || ||||| |||||||| || | || || | Sbjct 866 GAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCG 925 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| || | ||||||||| |||||||| | ||||||||||||||||| || ||||| Sbjct 926 ACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTC 985 Query 195042 TTTGTCTTGAATTTT 195056 || ||||| || || Sbjct 986 CTTATCTTGGATCTT 1000 Score = 93.3 bits (102), Expect = 9e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | |||||||| ||||| ||||||||||||||||||| ||||| | Sbjct 401 GAGACGCAATACCAAATGAAGAGTTGACTCCTTTTGAATATTGTAATCGGATAGAGTGCG 460 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTG 195020 |||||||| | ||||||||| |||||||| | ||||| Sbjct 461 ACCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTG 499 >seq125840 Length=3442 Score = 159 bits (176), Expect = 8e-34 Identities = 158/202 (78%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||||| || ||||| |||||||| |||| |||| || | |||||||| | || ||||| Sbjct 734 GTGGATTCCTTTTGGATATTGTAGTCGGACAAG-GTGCGACCATCTTCCAATTGTTTACC 676 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| | |||||||| ||||| ||||| |||||||||||||| ||||| ||| Sbjct 675 GGCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTT 616 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| || ||||||||||| || || ||||| | ||||| ||||| || || ||||| Sbjct 615 GACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGT 556 Query 195123 TTTTACGAACACTTGCATTTAT 195144 ||| ||||| | ||||| ||| Sbjct 555 TTTGACGAAGATCTGCATCTAT 534 >seq177482 Length=2829 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| | || || ||||||||||||||||| |||| ||| || | ||||| Sbjct 1639 CAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCATC 1580 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||| || || || || | ||||| || ||||| ||||| ||||||||||| Sbjct 1579 TTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTC 1520 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || ||||| || || || |||||||| ||| || ||||| || | || Sbjct 1519 CTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGT 1460 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||| ||||| ||||| | ||||| Sbjct 1459 CTTACCCGTCAGGGTTTTGACGAATATCTGCAT 1427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106673949330170