Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq41982 553 2e-152
seq91934 271 9e-68
>seq41982
Length=5201
Score = 553 bits (612), Expect = 2e-152
Identities = 1492/2283 (65%), Gaps = 79/2283 (3%)
Strand=Plus/Minus
Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033
|| ||||||||||| | || | ||| |||| |||||| | ||||||||||| ||
Sbjct 3363 TTATCCACAGTAAATTGTATAGCATTTGCTGCTGGTTTTGTCCTCAAATAATACATGCCG 3304
Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093
|||||||| ||| |||| |||||||||| || || |||||| || | |||
Sbjct 3303 GTCTTTAAGCCTGCTTTCCAGGCATAGAAATGAATTGAGGTCAATTTACCGTAGTTGGGT 3244
Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153
|| | | ||| ||||| | || ||||| ||||| || || || || | ||| ||||||
Sbjct 3243 TCAGCCACATGTATATTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCGGCTGCC 3184
Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213
|| | | | | | | | |||||||| ||||| ||||| | | ||| |||
Sbjct 3183 ATTTGAATAGTGGTCTTAACGGAAATCTCCCAAACTGTCTTATATAGATCACGAATATCT 3124
Query 47214 TCTGGGAGATTAGTATTT----TGAATAGATCCTCCgttttctataattttgttttttaa 47269
| ||||| || | | | || ||||| || | || |||||| ||||||| |
Sbjct 3123 T-TGGGAATTTCATCTATGGCTTGTATAGAGCCGCGATTGGAAATAATTCTGTTTTTCAT 3065
Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329
||| | ||| || | ||||||||||| ||||| | |||| |||| ||||| |
Sbjct 3064 TTCGTCATCCCATAGATCACGTTCAGTTAAATCTTTTAGCAAATGATGATTGACAATATT 3005
Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389
|||||||| ||||| || | | | |||| ||||| ||||| || || | |||||
Sbjct 3004 GAATTCTCCCGATAGCACACGTCTGGTATAAATATTGGAGGTATAAGGCTCAAATGATTC 2945
Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATT 47449
|||||| || || ||||| || || || || || ||||| | || | || || |||
Sbjct 2944 ATTATTGCCCAAGATTTGTGCGGTAGAGGCAGTGGGCATAGGGGCCAATAGCAAAGAATT 2885
Query 47450 TCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGG 47509
|| ||| |||| | || || | | |||| | ||| | ||| | ||
Sbjct 2884 TCGTACACCATGCTGTTTGATTTTCTCTTTCAACTCTGTCCAGTTCCACAAATCGGTAGG 2825
Query 47510 AACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGT 47569
| |||||| | ||| ||||| || || || ||||||| ||| | || ||| ||
Sbjct 2824 AGTTTTATTCCACATATCGTATTGTAGTATGCCCTTACTTACCGGGCAGCCGGGATAAGT 2765
Query 47570 TTTATAAGGACCGTATAGTTTAGCG---AGTTCACAACTTGCTTCCAATGCACTATAATA 47626
|| ||||||||| ||| || || | ||||||||| ||||||||||| | ||||||
Sbjct 2764 TTCATAAGGACC---TAGCTTTTCGGACAATTCACAACTAGCTTCCAATGCGCCATAATA 2708
Query 47627 TATTGTTTCAAATATTTTTATGTTT-----AGATTCCTTGCTTCTGATGATTCAAAAGGA 47681
|| ||||| || |||| | ||| || |||| ||| | | ||| | ||
Sbjct 2707 AATAGTTTCGAAAATTTGTTGATTTAACAAAGCCGCCTT--TTC-GCT--TTCGTAGGGG 2653
Query 47682 TANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGA 47741
| ||||| || || | || || ||||| || ||||| || | ||||
Sbjct 2652 AAACGCATTAAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGA 2593
Query 47742 GTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTT 47801
| |||||| | || || || | ||||| ||| || ||||| ||||| ||
Sbjct 2592 CGTAGATTAGATTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTG 2533
Query 47802 AGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTT 47861
||| || | | ||||||| ||||| || || |||| |||
Sbjct 2532 AGATTTTTGGTAATGACTTTAGTAACATTTTTTAATTTCTTAAAGTCGAA--TGTTTTTT 2475
Query 47862 -----ATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTG 47916
| |||||| ||||||| ||||| || || | |||||| || |||| ||||| |
Sbjct 2474 CAGGCGTCACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGG 2415
Query 47917 GATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTT 47976
| | ||| | || ||||| | ||| | |||| || || ||||| || | |||||
Sbjct 2414 GTGCGGAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTT 2355
Query 47977 GATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTA 48036
| || ||| | ||||| || |||||||| | ||| | || || || |||||||
Sbjct 2354 GCTGGTTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTCTA 2295
Query 48037 TCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTAT 48096
|||| |||||| || | ||||| || | ||||| | | | |||||
Sbjct 2294 CTTGAGCTTCAATTATGGCAAACCAAAGAGCCTGGGCCTTGACGGTACGGTTTGCTTTGC 2235
Query 48097 TATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACC 48156
|||| ||| || || ||||| || | || ||||| | || | || | | | |
Sbjct 2234 CTTCATTTTCATACTTGGTATACAATTCTTCGAATTCCGCACCCCAAACTTCCTGCAGAC 2175
Query 48157 CAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAA 48216
||||||||| | |||||||| || |||||||| ||| | || |||||| ||||||
Sbjct 2174 CAGGACATTTGTGGGGACACATTAACGACCAATCTCCATTTTCTTCTACTCTTTTCATAA 2115
Query 48217 ATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275
| | ||| |||||||| || || ||| |||| ||| |||| ||| | ||||| |||||
Sbjct 2114 ACAAATCGGGTATCCACAGGGC-ATAGAATAGATCTCTAGCTCTGTGCTCTTCCTTGCCG 2056
Query 48276 CTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATAT 48334
|||| | ||||| | ||| ||| || | ||||| | |||||| || || ||||| ||
Sbjct 2055 GTATTTTTCTTTAAATCCAA-AAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAAT 1997
Query 48335 TGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA 48394
|| | | | ||||| ||||| || |||||||||| ||| | |||| ||||||| |
Sbjct 1996 GGCAAATGCTCCTGGACGTTTGCCGCCGCCTTGATCTACATAGCGGGCAACATTGTTAAA 1937
Query 48395 AACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454
|| || | ||| || || | |||||||| | || || || || || || | ||
Sbjct 1936 CACCCTAAGCATGGGCACCAGTCCATTTGAGGTGCCGTTAGTACCATCGATGGAAGTGCC 1877
Query 48455 ACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGA 48512
| || ||||| | | | || ||| || |||||||| || ||| || || |
Sbjct 1876 CTTGGCCCTTATGCAGTGCACGTT--AATGCCAATACCACCAGCAGATTTGGAAATCATG 1819
Query 48513 GCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGA 48572
|| || ||| | | | |||| ||||| ||| |||| | | ||| | || ||
Sbjct 1818 GCGCATTGTTCCACTGACTTGAAAATACCTTCAATAGAATCAGCCACCATGGTCAAAAGG 1759
Query 48573 AAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632
|| || |||| ||| || | || | | | ||| || || || || |||||
Sbjct 1758 AAGCACGATGACAATTGTGGTCGCGGGGTAGCAGCAGCAAACAAAGTGGGCGAGGCATGT 1699
Query 48633 ATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGA 48692
|||| | ||| || ||||| ||||| ||||| || | |||||||| || | |
Sbjct 1698 GTAAAATAACGCTCAGACAACAAGTTATAAGTTTCGATGGCCGAATCTATGTCATCTCCA 1639
Query 48693 TGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTT 48752
||||||||||||| ||| | ||||||||||| || |||||||||||||| || |||
Sbjct 1638 TGTATACCTATAGCTACTCTCATTAACATATGCTGTGGTCTTTCAACAATCTTACCATTC 1579
Query 48753 ATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCG 48812
||||||| | ||| ||| | |||| ||| || || |||||||| ||||| ||||||
Sbjct 1578 ATTTTCAGCAAATAGGATCTCTCCAGTGTCTTGAATCCAAAATAATTGTAGCCAAAGTCA 1519
Query 48813 TTATCATTAATAATTGATGAATTTA----TTCT--TTCCTTATG--------TTTA--TA 48856
||||| |||||| || ||||| | |||| | ||| || | || |
Sbjct 1518 CGATCATAAATAATGGACGAATTCAAACGTTCTGCATTCTTCTGCACCACATTGTAGTGA 1459
Query 48857 TACT---ACATC----------CATTAC------ATTTTTTGATATAATTGATTCCTTGT 48897
|||| | ||| |||| ||| || | |||| ||| |
Sbjct 1458 TACTCCGAAATCATGGGCGAAGTTTTACCCGTCTCTTTGTTAACATAA-TGA-------T 1407
Query 48898 AAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAG 48957
| ||||| || ||| || ||||| |||||| ||||| || || | ||| || | |
Sbjct 1406 ACAGATCACTTATAACCTCTGAAAATACTTTTTTCGTTTCCTTGTGCAAATTGGAGACGG 1347
Query 48958 ATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTACTAGATATTT 49017
|| | ||| || ||||| |||||||| |||| ||||||| ||||| || | | |
Sbjct 1346 CAATACGAGCCGCCAATATGGCATAATCACCATGATTTGTTGTCAATGTAGCAGCTGTCT 1287
Query 49018 CTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTT 49077
| ||||| || | || || |||| ||| || ||||| |||| || | |||||||
Sbjct 1286 CGGCTGCCAAATTGTCCAACTCTTGAGTTGTAACACCACAGTATAAGCCATTGATAACTT 1227
Query 49078 TCATTGCTATATTTACTGGATCTATATGATCCATATCCAGTCCATAACATAAtttttttA 49137
||| || || ||||| || | | |||||||| | |||||| || | |||| |
Sbjct 1226 TCAGTGTAATGGCCACTGGGTCAACAAAATCCATATTTAATCCATAGCAAAGCTTTTGAA 1167
Query 49138 TTCTAGATGTAATTTTATCAAACATTATATTCTCTTTACGACCGTCACGTTTTATAACAA 49197
| | ||||||||||||||| || || | |||||| || || || ||||| | |||||
Sbjct 1166 TACGAGATGTAATTTTATCGAAATGTACTTCCTCTTTGCGGCCATCTCGTTTAAGAACAA 1107
Query 49198 ACA 49200
|||
Sbjct 1106 ACA 1104
>seq91934
Length=4437
Score = 271 bits (300), Expect = 9e-68
Identities = 484/701 (69%), Gaps = 4/701 (1%)
Strand=Plus/Minus
Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854
||| |||||||||| ||||||| ||||| | ||||||||| || || || || ||
Sbjct 3565 ATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAATCAAATTGAC 3506
Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC 18914
|| | || || || | || |||||||| || ||||| || || | ||| ||
Sbjct 3505 GGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTATTATTTCGGT 3446
Query 18915 AACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAA-ACATGCAAAATCAC 18973
| ||| || | ||| | | || | |||||||||||| || ||| ||||||||||
Sbjct 3445 TATTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAACACA-GCAAAATCAC 3387
Query 18974 AATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTC 19033
|||||| |||||||| | | ||||| ||||| || ||||| | |||||||| || |
Sbjct 3386 AATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAGGCATAAGAC 3327
Query 19034 CTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTG 19093
| | ||| |||| ||| ||||| |||||||| ||| ||||| || || || || |
Sbjct 3326 CACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAAGAAAATGCCCTCCACAG 3267
Query 19094 CTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA-TGAATCCATTTCAGT 19152
| ||||| |||| | | ||| ||| || | || ||| | | |||||| || |
Sbjct 3266 CGGCAAATGCAATAATGCGTTCACCAAAATTGGC-CGATTTTGAGCCAATCCAAGACATT 3208
Query 19153 GCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATA 19212
|||||||| ||||| || ||| |||||| || || || | |||||| |||||
Sbjct 3207 GCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAGAGATAATCG 3148
Query 19213 CGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATA 19272
|| | || |||||||| || || ||||| | ||| |||||||| || || | |
Sbjct 3147 CGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATACTATACATTTCAGAGTGTACA 3088
Query 19273 TTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTA 19332
||||| || || || || || || || ||||| | ||| ||||| | ||||| ||
Sbjct 3087 TTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACTTGTACCTCTTGG 3028
Query 19333 CAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAAT 19392
|||| | ||| || | ||||||||| || || ||||| ||| ||||| || || |
Sbjct 3027 GAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCAGCAAAGAAGGCCAGA 2968
Query 19393 ACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTA 19452
|||||| ||||| | |||| ||| | | | | ||| || | ||||||||
Sbjct 2967 ACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAGTCCGAATTATCTTTA 2908
Query 19453 GATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
|| | |||||||||||| || ||||||||||| || || ||
Sbjct 2907 GAGAGATCTACTTCTTCTACAGTCCAAAAAGATGCTTCAGC 2867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560721023636400
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