Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq41982 553 2e-152 seq91934 271 9e-68 >seq41982 Length=5201 Score = 553 bits (612), Expect = 2e-152 Identities = 1492/2283 (65%), Gaps = 79/2283 (3%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || ||||||||||| | || | ||| |||| |||||| | ||||||||||| || Sbjct 3363 TTATCCACAGTAAATTGTATAGCATTTGCTGCTGGTTTTGTCCTCAAATAATACATGCCG 3304 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 |||||||| ||| |||| |||||||||| || || |||||| || | ||| Sbjct 3303 GTCTTTAAGCCTGCTTTCCAGGCATAGAAATGAATTGAGGTCAATTTACCGTAGTTGGGT 3244 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 || | | ||| ||||| | || ||||| ||||| || || || || | ||| |||||| Sbjct 3243 TCAGCCACATGTATATTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCGGCTGCC 3184 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || | | | | | | | |||||||| ||||| ||||| | | ||| ||| Sbjct 3183 ATTTGAATAGTGGTCTTAACGGAAATCTCCCAAACTGTCTTATATAGATCACGAATATCT 3124 Query 47214 TCTGGGAGATTAGTATTT----TGAATAGATCCTCCgttttctataattttgttttttaa 47269 | ||||| || | | | || ||||| || | || |||||| ||||||| | Sbjct 3123 T-TGGGAATTTCATCTATGGCTTGTATAGAGCCGCGATTGGAAATAATTCTGTTTTTCAT 3065 Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 ||| | ||| || | ||||||||||| ||||| | |||| |||| ||||| | Sbjct 3064 TTCGTCATCCCATAGATCACGTTCAGTTAAATCTTTTAGCAAATGATGATTGACAATATT 3005 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 |||||||| ||||| || | | | |||| ||||| ||||| || || | ||||| Sbjct 3004 GAATTCTCCCGATAGCACACGTCTGGTATAAATATTGGAGGTATAAGGCTCAAATGATTC 2945 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATT 47449 |||||| || || ||||| || || || || || ||||| | || | || || ||| Sbjct 2944 ATTATTGCCCAAGATTTGTGCGGTAGAGGCAGTGGGCATAGGGGCCAATAGCAAAGAATT 2885 Query 47450 TCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGG 47509 || ||| |||| | || || | | |||| | ||| | ||| | || Sbjct 2884 TCGTACACCATGCTGTTTGATTTTCTCTTTCAACTCTGTCCAGTTCCACAAATCGGTAGG 2825 Query 47510 AACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGT 47569 | |||||| | ||| ||||| || || || ||||||| ||| | || ||| || Sbjct 2824 AGTTTTATTCCACATATCGTATTGTAGTATGCCCTTACTTACCGGGCAGCCGGGATAAGT 2765 Query 47570 TTTATAAGGACCGTATAGTTTAGCG---AGTTCACAACTTGCTTCCAATGCACTATAATA 47626 || ||||||||| ||| || || | ||||||||| ||||||||||| | |||||| Sbjct 2764 TTCATAAGGACC---TAGCTTTTCGGACAATTCACAACTAGCTTCCAATGCGCCATAATA 2708 Query 47627 TATTGTTTCAAATATTTTTATGTTT-----AGATTCCTTGCTTCTGATGATTCAAAAGGA 47681 || ||||| || |||| | ||| || |||| ||| | | ||| | || Sbjct 2707 AATAGTTTCGAAAATTTGTTGATTTAACAAAGCCGCCTT--TTC-GCT--TTCGTAGGGG 2653 Query 47682 TANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGA 47741 | ||||| || || | || || ||||| || ||||| || | |||| Sbjct 2652 AAACGCATTAAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGA 2593 Query 47742 GTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTT 47801 | |||||| | || || || | ||||| ||| || ||||| ||||| || Sbjct 2592 CGTAGATTAGATTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTG 2533 Query 47802 AGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTT 47861 ||| || | | ||||||| ||||| || || |||| ||| Sbjct 2532 AGATTTTTGGTAATGACTTTAGTAACATTTTTTAATTTCTTAAAGTCGAA--TGTTTTTT 2475 Query 47862 -----ATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTG 47916 | |||||| ||||||| ||||| || || | |||||| || |||| ||||| | Sbjct 2474 CAGGCGTCACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGG 2415 Query 47917 GATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTT 47976 | | ||| | || ||||| | ||| | |||| || || ||||| || | ||||| Sbjct 2414 GTGCGGAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTT 2355 Query 47977 GATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTA 48036 | || ||| | ||||| || |||||||| | ||| | || || || ||||||| Sbjct 2354 GCTGGTTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTCTA 2295 Query 48037 TCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTAT 48096 |||| |||||| || | ||||| || | ||||| | | | ||||| Sbjct 2294 CTTGAGCTTCAATTATGGCAAACCAAAGAGCCTGGGCCTTGACGGTACGGTTTGCTTTGC 2235 Query 48097 TATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACC 48156 |||| ||| || || ||||| || | || ||||| | || | || | | | | Sbjct 2234 CTTCATTTTCATACTTGGTATACAATTCTTCGAATTCCGCACCCCAAACTTCCTGCAGAC 2175 Query 48157 CAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAA 48216 ||||||||| | |||||||| || |||||||| ||| | || |||||| |||||| Sbjct 2174 CAGGACATTTGTGGGGACACATTAACGACCAATCTCCATTTTCTTCTACTCTTTTCATAA 2115 Query 48217 ATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 | | ||| |||||||| || || ||| |||| ||| |||| ||| | ||||| ||||| Sbjct 2114 ACAAATCGGGTATCCACAGGGC-ATAGAATAGATCTCTAGCTCTGTGCTCTTCCTTGCCG 2056 Query 48276 CTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATAT 48334 |||| | ||||| | ||| ||| || | ||||| | |||||| || || ||||| || Sbjct 2055 GTATTTTTCTTTAAATCCAA-AAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAAT 1997 Query 48335 TGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA 48394 || | | | ||||| ||||| || |||||||||| ||| | |||| ||||||| | Sbjct 1996 GGCAAATGCTCCTGGACGTTTGCCGCCGCCTTGATCTACATAGCGGGCAACATTGTTAAA 1937 Query 48395 AACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454 || || | ||| || || | |||||||| | || || || || || || | || Sbjct 1936 CACCCTAAGCATGGGCACCAGTCCATTTGAGGTGCCGTTAGTACCATCGATGGAAGTGCC 1877 Query 48455 ACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGA 48512 | || ||||| | | | || ||| || |||||||| || ||| || || | Sbjct 1876 CTTGGCCCTTATGCAGTGCACGTT--AATGCCAATACCACCAGCAGATTTGGAAATCATG 1819 Query 48513 GCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGA 48572 || || ||| | | | |||| ||||| ||| |||| | | ||| | || || Sbjct 1818 GCGCATTGTTCCACTGACTTGAAAATACCTTCAATAGAATCAGCCACCATGGTCAAAAGG 1759 Query 48573 AAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632 || || |||| ||| || | || | | | ||| || || || || ||||| Sbjct 1758 AAGCACGATGACAATTGTGGTCGCGGGGTAGCAGCAGCAAACAAAGTGGGCGAGGCATGT 1699 Query 48633 ATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGA 48692 |||| | ||| || ||||| ||||| ||||| || | |||||||| || | | Sbjct 1698 GTAAAATAACGCTCAGACAACAAGTTATAAGTTTCGATGGCCGAATCTATGTCATCTCCA 1639 Query 48693 TGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTT 48752 ||||||||||||| ||| | ||||||||||| || |||||||||||||| || ||| Sbjct 1638 TGTATACCTATAGCTACTCTCATTAACATATGCTGTGGTCTTTCAACAATCTTACCATTC 1579 Query 48753 ATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCG 48812 ||||||| | ||| ||| | |||| ||| || || |||||||| ||||| |||||| Sbjct 1578 ATTTTCAGCAAATAGGATCTCTCCAGTGTCTTGAATCCAAAATAATTGTAGCCAAAGTCA 1519 Query 48813 TTATCATTAATAATTGATGAATTTA----TTCT--TTCCTTATG--------TTTA--TA 48856 ||||| |||||| || ||||| | |||| | ||| || | || | Sbjct 1518 CGATCATAAATAATGGACGAATTCAAACGTTCTGCATTCTTCTGCACCACATTGTAGTGA 1459 Query 48857 TACT---ACATC----------CATTAC------ATTTTTTGATATAATTGATTCCTTGT 48897 |||| | ||| |||| ||| || | |||| ||| | Sbjct 1458 TACTCCGAAATCATGGGCGAAGTTTTACCCGTCTCTTTGTTAACATAA-TGA-------T 1407 Query 48898 AAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAG 48957 | ||||| || ||| || ||||| |||||| ||||| || || | ||| || | | Sbjct 1406 ACAGATCACTTATAACCTCTGAAAATACTTTTTTCGTTTCCTTGTGCAAATTGGAGACGG 1347 Query 48958 ATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTACTAGATATTT 49017 || | ||| || ||||| |||||||| |||| ||||||| ||||| || | | | Sbjct 1346 CAATACGAGCCGCCAATATGGCATAATCACCATGATTTGTTGTCAATGTAGCAGCTGTCT 1287 Query 49018 CTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTT 49077 | ||||| || | || || |||| ||| || ||||| |||| || | ||||||| Sbjct 1286 CGGCTGCCAAATTGTCCAACTCTTGAGTTGTAACACCACAGTATAAGCCATTGATAACTT 1227 Query 49078 TCATTGCTATATTTACTGGATCTATATGATCCATATCCAGTCCATAACATAAtttttttA 49137 ||| || || ||||| || | | |||||||| | |||||| || | |||| | Sbjct 1226 TCAGTGTAATGGCCACTGGGTCAACAAAATCCATATTTAATCCATAGCAAAGCTTTTGAA 1167 Query 49138 TTCTAGATGTAATTTTATCAAACATTATATTCTCTTTACGACCGTCACGTTTTATAACAA 49197 | | ||||||||||||||| || || | |||||| || || || ||||| | ||||| Sbjct 1166 TACGAGATGTAATTTTATCGAAATGTACTTCCTCTTTGCGGCCATCTCGTTTAAGAACAA 1107 Query 49198 ACA 49200 ||| Sbjct 1106 ACA 1104 >seq91934 Length=4437 Score = 271 bits (300), Expect = 9e-68 Identities = 484/701 (69%), Gaps = 4/701 (1%) Strand=Plus/Minus Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854 ||| |||||||||| ||||||| ||||| | ||||||||| || || || || || Sbjct 3565 ATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAATCAAATTGAC 3506 Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC 18914 || | || || || | || |||||||| || ||||| || || | ||| || Sbjct 3505 GGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTATTATTTCGGT 3446 Query 18915 AACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAA-ACATGCAAAATCAC 18973 | ||| || | ||| | | || | |||||||||||| || ||| |||||||||| Sbjct 3445 TATTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAACACA-GCAAAATCAC 3387 Query 18974 AATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTC 19033 |||||| |||||||| | | ||||| ||||| || ||||| | |||||||| || | Sbjct 3386 AATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAGGCATAAGAC 3327 Query 19034 CTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTG 19093 | | ||| |||| ||| ||||| |||||||| ||| ||||| || || || || | Sbjct 3326 CACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAAGAAAATGCCCTCCACAG 3267 Query 19094 CTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA-TGAATCCATTTCAGT 19152 | ||||| |||| | | ||| ||| || | || ||| | | |||||| || | Sbjct 3266 CGGCAAATGCAATAATGCGTTCACCAAAATTGGC-CGATTTTGAGCCAATCCAAGACATT 3208 Query 19153 GCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATA 19212 |||||||| ||||| || ||| |||||| || || || | |||||| ||||| Sbjct 3207 GCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAGAGATAATCG 3148 Query 19213 CGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATA 19272 || | || |||||||| || || ||||| | ||| |||||||| || || | | Sbjct 3147 CGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATACTATACATTTCAGAGTGTACA 3088 Query 19273 TTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTA 19332 ||||| || || || || || || || ||||| | ||| ||||| | ||||| || Sbjct 3087 TTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACTTGTACCTCTTGG 3028 Query 19333 CAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAAT 19392 |||| | ||| || | ||||||||| || || ||||| ||| ||||| || || | Sbjct 3027 GAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCAGCAAAGAAGGCCAGA 2968 Query 19393 ACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTA 19452 |||||| ||||| | |||| ||| | | | | ||| || | |||||||| Sbjct 2967 ACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAGTCCGAATTATCTTTA 2908 Query 19453 GATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 || | |||||||||||| || ||||||||||| || || || Sbjct 2907 GAGAGATCTACTTCTTCTACAGTCCAAAAAGATGCTTCAGC 2867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560721023636400