Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq91934 233 2e-56 seq39385 93.3 5e-14 >seq91934 Length=4437 Score = 233 bits (258), Expect = 2e-56 Identities = 477/695 (69%), Gaps = 14/695 (2%) Strand=Plus/Minus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 ||| || |||||||| || |||| |||| | || | | || || ||||| | || || Sbjct 3565 ATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAATCAAATTGAC 3506 Query 37070 TGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAA 37128 || | || || | ||||| | || ||| ||| ||||||| || | | ||| | Sbjct 3505 GGGCAAAGCTTCGGTTAAGAACTC-TTGTTCAATTTTTACAGCTTCCGTTATTATTT--- 3450 Query 37129 CAATAACTTCT-TCA--GTTGGGG-GATATTTTAAATATTTAAACAATAA-ACATGCAAA 37183 | | | |||| ||| | |||| | | | |||||| |||||||| ||| ||| ||||| Sbjct 3449 CGGTTA-TTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAACACA-GCAAA 3392 Query 37184 ATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCAT 37243 ||||||||||||||| || || | | ||||| ||||| || || || | || ||||| Sbjct 3391 ATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAGGCAT 3332 Query 37244 TAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTC 37303 | ||| | ||| || | ||||||||| | |||||| ||| |||||||| || || Sbjct 3331 AAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAAGAAAATGCCCTC 3272 Query 37304 AACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA-AATCCAtt 37362 || || |||||||| | || ||| ||| ||| ||| | || | || |||||| Sbjct 3271 CACAGCGGCAAATGCAATAATGCGTTCACCAAAA-TTGGCCGATTTTGAGCCAATCCAAG 3213 Query 37363 tttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAA 37422 ||| |||||| ||||| |||||| | || |||||||| || || |||||| Sbjct 3212 ACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAGAGAT 3153 Query 37423 AGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGT 37482 | | || ||| | |||| | || || | || || | | ||||||||||||||||| Sbjct 3152 AATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATACTATACATTTCAGAGT 3093 Query 37483 GAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACAT 37542 | | |||||| || || || || |||||||| ||||| | || || | | ||| || | Sbjct 3092 GTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACTTGTACCT 3033 Query 37543 CGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAG 37602 | | |||| | | | | | |||||||| || || ||||| ||| |||||||| | Sbjct 3032 CTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCAGCAAAGAAGG 2973 Query 37603 CAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATAT 37662 | ||||||| | ||||| | | |||| | | | ||||| ||| || | ||| Sbjct 2972 CCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAGTCCGAATTAT 2913 Query 37663 CTTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 |||| || | ||| ||||| || || ||||||||| Sbjct 2912 CTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAA 2878 >seq39385 Length=6125 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 |||||||||||| |||||||||||||| || |||||||| | ||| | || ||||| Sbjct 2662 AGGTGTTTTACACACAAAATTTTGGATTTCGGACAATAAACACATTTATCTGGGCAGTGC 2603 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGTAAAAGA 153382 |||||||| |||||||| |||| ||||| ||||| Sbjct 2602 AAATATGGACTGGAGATCTTTAACCCAAGTCAAAGA 2567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590854443860400