Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq64788 168 5e-37 seq177482 158 1e-33 seq125840 138 9e-28 >seq64788 Length=4825 Score = 168 bits (186), Expect = 5e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 |||||| || |||||||||||||| || ||||| || |||||||||| | || | | Sbjct 1372 ACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGTCC 1431 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| ||||| || || || ||||| |||||||| || ||||| |||||||| Sbjct 1432 ATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTT 1491 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| |||||| |||| | |||||| || | ||| ||||| | || | Sbjct 1492 ATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAAT 1551 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || || || || || |||||||| Sbjct 1552 TGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 161 bits (178), Expect = 8e-35 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 |||||| || || |||||||| || |||||||| || |||||||||| | || | | Sbjct 1600 ACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCC 1659 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| ||||| || || || |||||||||||||| || ||||| |||||||| Sbjct 1660 ATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTT 1719 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| ||| ||| |||||| || || || | ||| || || | || | Sbjct 1720 GTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAAT 1779 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| || ||||| ||||| || ||||| |||||| Sbjct 1780 TGTTTTTCCCGTTAATGTTTTAACGAATATTTGCATG 1816 Score = 156 bits (172), Expect = 3e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || || || || || ||||| ||||||||||||| | ||| | | | Sbjct 176 ACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCC 235 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| |||||||| || || |||||||| || || || || ||||| ||||| || Sbjct 236 ATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTT 295 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| |||||||| ||| ||| |||| | |||||||| | ||| ||||| | |||| Sbjct 296 ATCCTGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGTGAT 355 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || || || || || || |||||||| Sbjct 356 GGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391 Score = 156 bits (172), Expect = 3e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||||| ||| |||||||| |||||||||||||| || |||||||||| | ||| | | Sbjct 2056 ACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCC 2115 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||| ||||| ||||| || | ||| |||||||| || |||||||| || || Sbjct 2116 GTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTT 2175 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| || ||| |||| | ||| ||||| | ||| || || | |||| Sbjct 2176 ATCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGAT 2235 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| || || || || || ||||| Sbjct 2236 GGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCAT 2271 Score = 154 bits (170), Expect = 1e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 |||||||| || ||||| | |||||||||||||||||||||||||| | | || | Sbjct 1826 AAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGC 1885 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || |||||||| ||||| || || |||||||| |||||||| || || || ||||| Sbjct 1886 CCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCC 1945 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || ||||||||||| ||| ||| |||| | ||| || || | || || || | ||| Sbjct 1946 TTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTG 2005 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||| || || || || ||||| || ||||| Sbjct 2006 ATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||||||||| ||||| ||||| |||||||| || | || || | | Sbjct 1144 ACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACC 1203 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| |||||||| || || |||||||| ||||| || || || || ||||| || Sbjct 1204 ATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTT 1263 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| || || || ||| |||| | || || || | ||| || || | |||| Sbjct 1264 ATCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTGAT 1323 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || ||||| || || |||||||| Sbjct 1324 GGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359 Score = 109 bits (120), Expect = 4e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| ||||| |||||||| || || |||||||| || ||||| || ||||||||||| | Sbjct 7 CATCTTCCAACTGCTTACCAGCGAAAATCAAACGTTGCTGATCCGGGGGAATGCCTTCCT 66 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 |||| || ||||| || || |||| | || || || | || ||||| | |||| Sbjct 67 TATCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGCTCTACTTCCAATGTGA 126 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| || |||||||| || || || |||||| Sbjct 127 TAGTTTTGCCAGTCAAAGTTTTAACGAAGATTTGCATG 164 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||||||||| ||||| ||||| |||||||| || | || || | | Sbjct 869 ACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACC 928 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| |||||||| || || |||||||| ||||| || || || || ||||| || Sbjct 929 ATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTT 988 Query 101374 ATCTTGAATTTT 101385 |||||| || || Sbjct 989 ATCTTGGATCTT 1000 >seq177482 Length=2829 Score = 158 bits (174), Expect = 1e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || || || | || ||||||||||| |||||||| |||| | || | || Sbjct 1641 CGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCA 1582 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || ||||||||||| || ||||| |||||||| || ||||| || ||||| |||||||| Sbjct 1581 TCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTG 1522 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || ||||| || ||| ||| |||| | |||||| || | ||| || |||||||||| Sbjct 1521 TCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATG 1462 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGG 101471 || || || || | ||||| || ||||||||||||| Sbjct 1461 GTCTTACCCGTCAGGGTTTTGACGAATATCTGCATGG 1425 >seq125840 Length=3442 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||| ||||| ||||| |||||||| |||| | || | |||| ||| Sbjct 746 ACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCC 687 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| || || |||||||| |||||||| || ||||| |||||||| ||||| Sbjct 686 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGG 627 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| |||| | ||||| | | || ||||| | || | || || Sbjct 626 ATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCTTA 567 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||||||| || || |||||||| Sbjct 566 CCAGTTAAAGTTTTGACGAAGATCTGCAT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395324497211070