Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq64788 123 2e-23
seq194683 111 1e-19
seq177482 96.9 3e-15
>seq64788
Length=4825
Score = 123 bits (136), Expect = 2e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||||||||| || ||| || ||||| |||||||| ||||| || | |||
Sbjct 1142 AGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGA 1201
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||||||||||||||| || |||| || ||||| || | || | || |||
Sbjct 1202 CCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCC 1261
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || ||||| || ||| | | | ||||| | || ||||||| ||
Sbjct 1262 TTATCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTG 1321
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||||||| ||||| ||||| || |||||||||||
Sbjct 1322 ATGGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359
Score = 109 bits (120), Expect = 4e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| ||||| || || ||| ||| ||||||||||||||||| || | | | ||
Sbjct 174 AGACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGG 233
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||||||||||||||| || |||| || || || || | ||||| || |||
Sbjct 234 CCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCC 293
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || ||| || ||| ||| | | | || || | || || |||| ||
Sbjct 294 TTATCCTGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGTG 353
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || ||||| || || || |||||||||||
Sbjct 354 ATGGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
|| || |||||||| | || |||||||| |||||||||||||| | | || ||
Sbjct 1829 CGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCG 1888
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| ||||| || |||||||| || |||| || |||||||| | || | || ||||||
Sbjct 1889 TCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTG 1948
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| ||| || ||| ||| | | || || || | ||| ||||||| || ||
Sbjct 1949 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATG 2008
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || ||||| || || ||||| || |||||
Sbjct 2009 GTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043
Score = 93.3 bits (102), Expect = 3e-14
Identities = 75/91 (82%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| |||||||| || || ||| ||||||||||||||||| |||||| | |||
Sbjct 402 AGACGCAATACCAAATGAAGAGTTGACTCCTTTTGAATATTGTAATCGGATAGAGTGCGA 461
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCA 48639
| || ||||||||||||||||| || ||||
Sbjct 462 CCATCTTCCAACTGCTTACCGGCGAAGATCA 492
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||||||||| || ||| || ||||| |||||||| ||||| || | |||
Sbjct 867 AGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGA 926
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||||||||||||||| || |||| || ||||| || | || | || |||
Sbjct 927 CCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCC 986
Query 48669 TTGTC 48673
|| ||
Sbjct 987 TTATC 991
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || || |||||||| || || ||| |||||||| |||||||| || | | ||
Sbjct 1370 AGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGT 1429
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| || ||||| || || || | || |||||||| | ||||| || ||
Sbjct 1430 CCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCT 1489
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || ||| || |||||| | | || || || | || || || | |||
Sbjct 1490 TTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTA 1549
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||||||| ||||| || || || |||||||||||
Sbjct 1550 ATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||||||| || || ||||||||||| |||||||| || | | | || |||| ||
Sbjct 2063 ACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCA 2122
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| || ||||||||||| || || || |||||||| | ||||| ||||||||| || |
Sbjct 2123 AGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTTATCTTGA 2182
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|| || || ||| | | || || || | || ||||| | || || || ||
Sbjct 2183 ATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGATGGTCTTG 2242
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || || || || |||||
Sbjct 2243 CCAGTTAATGTCTTCACGAAGATTTGCAT 2271
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || || ||||| || || || ||||||||| || |||||||| || | | ||
Sbjct 1598 AGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGT 1657
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| || ||||| || || || | ||||||||||| | ||||| || ||
Sbjct 1658 CCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCT 1717
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| || || ||| ||| | | | || || | || ||||| | |||
Sbjct 1718 TTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTA 1777
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||||||||| || ||||| || || || |||||
Sbjct 1778 ATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815
>seq194683
Length=1703
Score = 111 bits (122), Expect = 1e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 9122 CAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCAT 9181
|||| ||||| |||||||||||||| || || || || | || || | |||||| || |
Sbjct 1072 CAAAATCTGTTTCGGAATGATTGAATAGTACAACGCCTAGATTGCCACGGTAATCTTCGT 1131
Query 9182 CGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGA 9241
| || || ||||| ||||| || || |||| ||| || || || |||||||| ||||| |
Sbjct 1132 CAATAACTCCAGCGCCCACATCAATAAAGTTCTTAACAGCCAGACCAGAGCGAGGCGCTA 1191
Query 9242 TTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTTGC 9301
|| |||||| | || ||| | || | ||||||||||| | || ||| | ||||
Sbjct 1192 CTCTACCGTACGAACCGTTCGGCACTTCAATTTGCAAGTCGGTCTTTACTAGCGCTTTGC 1251
Query 9302 C 9302
|
Sbjct 1252 C 1252
>seq177482
Length=2829
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| ||||| || | || ||||||||||||||||| || || || | |||
Sbjct 1644 AGGCGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGA 1585
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| ||||| || ||||| |||| || || ||||| | |||| || ||
Sbjct 1584 CCATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCT 1525
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| ||| ||| | | || || || | || ||||| | ||
Sbjct 1524 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTG 1465
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || ||||||| ||||| || || ||||||||
Sbjct 1464 ATGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCAT 1427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380020624865730
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