Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq64788 109 5e-19 seq125840 96.9 3e-15 seq177482 87.8 2e-12 >seq64788 Length=4825 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||||||||| || |||||||||||||| ||||| ||||| || ||||| || Sbjct 1815 ATGCAAATATTCGTTAAAACATTAACGGGAAAAACAATTACATTAGAGGTCGAACCATCG 1756 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| |||||||| || | ||| ||||||| Sbjct 1755 GATACCATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 1696 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | || || || || ||||||||||||||| || || ||||||| ||| Sbjct 1695 CAGCGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 1636 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 || |||||||| || || || ||| |||| ||| Sbjct 1635 ATCCAAAAAGAGTCGACCCTTCACTTGGTCTTA 1603 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||| || || || |||||||| || || ||||| ||| || ||||| Sbjct 2274 AAAATGCAAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAACCA 2215 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || ||||| ||||| || || ||||| | ||| |||| Sbjct 2214 TCTGATACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCCCCAGAT 2155 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| | || || ||||| || |||||| | ||||| ||| || ||||||| Sbjct 2154 CAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGATTAC 2095 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||||||||||||||||| || |||| Sbjct 2094 AACATTCAAAAAGAATCTACTCTTCATTTGGT 2063 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||||| || || |||||||| ||| || || ||||| Sbjct 2043 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCTTCC 1984 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || ||||| || ||| | || |||||| Sbjct 1983 GATACTATTGAAAATGTTAAAGCTAAAATTCAA-GACAAGGAAGGAATCCCTCCAGATCA 1925 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || || || || |||||||||||||| || || | ||||| || Sbjct 1924 ACAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAA 1865 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || |||||||||||||| |||| |||||||| | || || || || || Sbjct 1864 TATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGGCAT 1814 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || || || || ||||| |||||| ||| ||||| || Sbjct 1587 ATGCAGATTTTCGTTAAGACCTTGACAGGAAAAACAATTACCTTAGAAGTTGAACCATCC 1528 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||| || ||||| || | ||| ||||||| Sbjct 1527 GACACTATTGAAAATGTAAAGGCCAAAATTCAAGATAAAGAAGGTATTCCCCCAGATCAA 1468 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | ||||| || || ||||||||||||||| || || ||||||| ||| Sbjct 1467 CAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 1408 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 |||||||| || ||||| || || |||| ||| Sbjct 1407 ATTCAAAAGGAGTCTACCCTTCATTTGGTCTTA 1375 >seq125840 Length=3442 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 28541 TGATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGA 28600 ||||| | || | ||||| || || || ||||| ||||| ||||| ||||||||| || Sbjct 526 TGATTAT-TATAGATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGA 584 Query 28601 AACGGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGT 28660 | || |||| || || | | || ||||| |||||| |||||||| || | Sbjct 585 AGTCGAGCCTTACGACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTAT 644 Query 28661 GCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTAT 28720 ||| ||||||||| | | ||||| || || ||||||||||||||| | || | Sbjct 645 TCCCCCAGATCAACAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTT 704 Query 28721 GGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 | |||| || || || ||||| ||||| || | || ||||| Sbjct 705 GTCCGACTACAATATCCAAAAGGAATCCACCTTACATTTGGTA 747 >seq177482 Length=2829 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || ||||| | |||||||| ||||| || || ||||| || Sbjct 1427 ATGCAGATATTCGTCAAAACCCTGACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCG 1486 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| || || | || |||||||| ||| | || |||||| Sbjct 1487 GACACTATCGAAAATGTCAAAGCCAAGATTCAG-GACAAAGAAGGAATTCCACCAGATCA 1545 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 || | | || ||||| || || |||||||||||| || | ||| | |||| || Sbjct 1546 GCAACGTTTGATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACACTTT--CCGACTAC 1603 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || |||||||||||||| || ||||| ||||||| Sbjct 1604 AATATTCAAAAAGAATCAACATTGCACTTGGTATT 1638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424380785506290