Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq41982 116 4e-21 seq195284 96.9 4e-15 >seq41982 Length=5201 Score = 116 bits (128), Expect = 4e-21 Identities = 476/737 (65%), Gaps = 30/737 (4%) Strand=Plus/Plus Query 75533 CCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAG 75592 || |||||| | || |||||| || ||||||||| |||||| | |||| |||| Sbjct 1922 CCCATGCTTAGGGTGTTTAACAATGTTGCCCGCTATGTAGATCAAG-GCGGCG--GCAAA 1978 Query 75593 GGGTCCA-------TCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCT 75645 | |||| | || | || ||||| || |||||| | ||||| | || || | Sbjct 1979 CG-TCCAGGAGCATTTGCCATTTATTTGGAGCCTTGGCATTCAGATATTTTTGAATTTTT 2037 Query 75646 TGAGTTAC-GACTCA-ACCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATC 75702 || ||| || | ||| || | |||||| | | | | ||||||||| || | | Sbjct 2038 GGATTTAAAGAAAAATACC--GGCAAGGAAGAG-CACAGAGCTAGAGATCTATTCTATGC 2094 Query 75703 CCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTT 75762 ||||||||| || || | || ||||| | || || || ||| | ||||| | | Sbjct 2095 CCTGTGGATACCCGATTTGTTTATGAAAAGAGTAGAAGAAAATGGAGATTGGTCGTTAAT 2154 Query 75763 CTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTA 75822 ||||| |||| || ||||| || | ||||| ||| || |||| | || Sbjct 2155 GTGTCCCCACAAATGTCCTGGTCTGCAGGAAGTTTGGGGTGCGGAATTCGAAGAATTGTA 2214 Query 75823 CACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAA 75882 || ||||||||| | || || | ||| || || || ||| | | ||||| Sbjct 2215 TACCAAGTATGAAAATGAAGGCAAAGCAAACCGTACCGTCAAGGCCCAGGCTCTTTGGTT 2274 Query 75883 GGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTG 75942 || || | || | || || || || || || || ||| | ||||||||||| || Sbjct 2275 TGCCATAATTGAAGCTCAAGTAGAAACAGGTACTCCCTACATGTTGTACAAGGATGCCTG 2334 Query 75943 TAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGA 76002 ||| ||||||||||| | ||| | || || || ||| || || | || ||||| Sbjct 2335 TAATCGTAAGAGTAACCAGCAAAATATTGGCACTATTAAGTGCAGTAACTTGTGTACGGA 2394 Query 76003 AATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCT 76062 |||| ||||||| | | ||||||| || || || |||||||| ||||| ||||| Sbjct 2395 AATTGTAGAGTATTCCGCACCCGATGAGATAGCCGTGTGTAATTTGGCCTCAATAGCCCT 2454 Query 76063 TCCAAAGTATGTCA---ATGAAGAGAC--TCGCACTTTTGATTATGAAAAACTTCATGAA 76117 | | || ||| | |||| | || ||| ||||| || ||||| ||| Sbjct 2455 TAATATGTTTGTGACGCCTGAAAAAACATTCG-ACTTTAAGAAATTAAAAA----ATG-- 2507 Query 76118 ATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTT 76177 | || || | ||||||||||||| ||| | |||| |||| || |||||||| | Sbjct 2508 -TTACTAAAGTCATTACCAAAAATCTCAACAAAATCATAGACATTAACTTTTATCCTCTG 2566 Query 76178 GAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTC 76237 | || | || |||||| | || || | |||||||| | ||||| || ||||| Sbjct 2567 CCGGAGGCCAGGAAATCTAATCTACGTCATCGTCCTATTGGCATAGGTGTGCAGGGTCTT 2626 Query 76238 GCGGATGTATTTATTTT 76254 || || ||| ||||| Sbjct 2627 GCCGACACATTGATTTT 2643 >seq195284 Length=2243 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || ||||| || || | |||||| ||||| ||| || ||| | || || || || Sbjct 1572 CCTGGCACGGGTAAAACATTACTCGCCAAAGCCACCGCAGGAGAAGCTAACGTGCCTTTT 1513 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || | || | || | ||| |||| |||||||||||||||||| || ||| || Sbjct 1512 ATTACGGTTTCCGGATCAGAGTTTTTGGAAATGTTTGTTGGTGTGGGTCCCTCAAGAGTG 1453 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||| | |||| ||| || ||| ||||| || |||||| | ||||| ||||| || Sbjct 1452 CGTGATATGTTTGCAATGGCACGCAAAAATGCTCCTTGTATTCTGTTCATAGATGAAATC 1393 Query 175495 GATGCGGTGGG 175505 ||||| || || Sbjct 1392 GATGCTGTTGG 1382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595096744228800