Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq64788 156 8e-33
seq177482 132 9e-26
>seq64788
Length=4825
Score = 156 bits (172), Expect = 8e-33
Identities = 176/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || ||||| | ||| || | ||||| ||||||||||| ||||| |||||
Sbjct 1808 ATTTGCATGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTG 1867
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| || || || || | || || |||||||| ||||| ||||| || | ||||||
Sbjct 1868 TAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGA 1927
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| |||||||| || ||||| ||||| | ||| | |||| |||||||||||||
Sbjct 1928 TCTGGAGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAA 1987
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| |||||| || | || || ||||| || || | || || ||||| ||||||||
Sbjct 1988 GGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | || | |||| ||| | |||| ||| || ||| || || |||
Sbjct 1358 ATACCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCG 1417
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| || || | ||| || |||||||| || || || ||||| | |||||||| ||
Sbjct 1418 GACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGG 1477
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||||||||| ||||||| |||| |||| |||||| ||||| | |||
Sbjct 1478 GGAATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCA 1537
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||||| || || ||||| ||||| | || || || || || |||||
Sbjct 1538 ACTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | || | |||| || | || | |||||| || || || |||
Sbjct 1586 ATACCACCGCGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCG 1645
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| || || | ||| || |||||||| || || |||||||| | ||||||||| ||
Sbjct 1646 GACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGG 1705
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||| ||||| ||||| | ||| | |||| || ||||| || | ||
Sbjct 1706 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCG 1765
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| |||| || || ||||| || |||| ||||| || |||||||||||
Sbjct 1766 ACCTCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815
Score = 116 bits (128), Expect = 7e-21
Identities = 169/239 (71%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | | || || |||| ||| | |||| ||||| ||| ||
Sbjct 2036 ATTTGCATACCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTG 2095
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| ||||| || || | || || | |||||| ||||||||||||| | ||||||
Sbjct 2096 TAATCGGACAAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGA 2155
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || || || || |||||||| ||||| | || | |||| ||||||||| ||
Sbjct 2156 TCTGGGGGAATGCCCTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGAT 2215
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
| || || |||| || || || || || |||| || || || || |||||||||||
Sbjct 2216 GGTTCGACCTCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATTTT 2274
>seq177482
Length=2829
Score = 132 bits (146), Expect = 9e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| | | || | ||||| |||||||| | ||||| |||||| ||||||||
Sbjct 1654 ACCACCACGAAGGCGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGA 1595
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
| || | | ||| || ||||| ||||| |||||||| || | || ||||| || ||
Sbjct 1594 AAGTGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGG 1535
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
||||||||||| || || || |||| ||| | |||| ||||| || || | || ||
Sbjct 1534 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGAC 1475
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| ||||| || || ||||| || || ||||| || ||||| |||||
Sbjct 1474 CTCAAGAGTGATGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCAT 1427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 897433265743200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |