Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq91934 165 1e-35 seq64788 136 6e-27 >seq91934 Length=4437 Score = 165 bits (182), Expect = 1e-35 Identities = 477/727 (66%), Gaps = 15/727 (2%) Strand=Plus/Minus Query 17972 AATTCGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTC 18031 ||||| ||| || | ||| ||||||||||| | ||||| |||||||| | |||||| Sbjct 3582 AATTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTC 3523 Query 18032 ATACCTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGAC 18091 || || | | ||| || | ||| || | | || |||| || || | |||| Sbjct 3522 ATGCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCT 3463 Query 18092 TCTTTTATTATGT---TTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAA 18148 || ||||||| | ||||| | || ||| | || | |||| || ||| || Sbjct 3462 TCCGTTATTATTTCGGTTATT-CTCTCACGGCTGGGACGTTGT--ATTAAATGTTTA-AA 3407 Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 || | | ||| ||||||||| |||||||| || || | || || || || || Sbjct 3406 CATTA-ACACA-GCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAG 3349 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || || | || ||||| | ||| | ||| ||||||||||||||||| || ||||| | | Sbjct 3348 AATGTAAGGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCA 3289 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGT---AT 18325 ||||| || ||||| || || || || || | | |||| ||||| || || Sbjct 3288 CTGAAGAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGAT 3229 Query 18326 TTATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTC 18385 || || || ||||| |||||| || | | | | || || | Sbjct 3228 TTTGAGC-CA--ATCCAAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTT 3172 Query 18386 TCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAAC 18445 || || |||||||| | || ||| || || | |||||| || || ||||||| || Sbjct 3171 TCAATGGCATTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAA 3112 Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505 | | |||||||||||| |||| ||||||| || || || |||| ||| || | | Sbjct 3111 ATACTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGT 3052 Query 18506 GCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCG 18565 ||||| | | ||| | ||| |||| | ||| || | ||| ||||| || ||||| Sbjct 3051 GCCTCTGTAACTTGTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCA 2992 Query 18566 TCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGA 18625 || | || || || || |||| ||||| | || || | ||||| || |||| Sbjct 2991 TCGGAAGCAGCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGT 2932 Query 18626 TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGAT 18685 || | ||| || ||||||| || ||||| |||||||| ||||||||||||| | Sbjct 2931 TTTTCCCAGTCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGATGCT 2872 Query 18686 TCGGCCT 18692 || |||| Sbjct 2871 TCAGCCT 2865 >seq64788 Length=4825 Score = 136 bits (150), Expect = 6e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| |||||||||| || |||||||| ||||||||||| |||||| || Sbjct 1815 ATGCAAATATTCGTTAAAACATTAACGGGAAAAACAATTACATTAGAGGTCGAACCATCG 1756 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| || ||| |||||| ||||| |||||||| || || ||||| ||| Sbjct 1755 GATACCATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 1696 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | || |||| || ||||| || | |||||| | || || || ||||| || Sbjct 1695 CAGCGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 1636 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || |||||| |||| ||||| || || ||| Sbjct 1635 ATCCAAAAAGAGTCGACCCTTCACTTGGTCTTA 1603 Score = 127 bits (140), Expect = 3e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||||||||||| ||||| || || || || || || ||| Sbjct 2043 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCTTCC 1984 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| |||||| ||||| || ||||| || |||||||| ||| Sbjct 1983 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCAA 1924 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| |||||||| || | ||||| | || || || ||||| ||| Sbjct 1923 CAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 1864 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 ||| ||||| | || | ||||| || ||| Sbjct 1863 ATACAAAAAGAATCTACATTGCATTTGGTATTA 1831 Score = 125 bits (138), Expect = 1e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || |||||||| ||||| || || || ||||| ||| ||| Sbjct 391 ATGCAGATTTTCGTTAAGACCTTGACTGGCAAAACCATCACCTTGGAAGTTGAACCATCT 332 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| |||||| || ||||| ||||| || || ||||| || Sbjct 331 GACACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAGGAAGGTATTCCCCCAGACCAG 272 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | |||||||||||| | |||||| | | ||||| || ||||| ||| Sbjct 271 CAACGTTTGATCTTCGCCGGTAAGCAGTTGGAAGATGGCCGTACTTTGTCCGATTACAAT 212 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| ||| | || || || || || || Sbjct 211 AT-TCAAAAGGAGTCCACTCTCCACTTGGTATT 180 Score = 118 bits (130), Expect = 2e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || ||||| |||||||| ||||| |||||||| ||| || Sbjct 1587 ATGCAGATTTTCGTTAAGACCTTGACAGGAAAAACAATTACCTTAGAAGTTGAACCATCC 1528 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || || ||||| |||||||||||||| || || ||||| ||| Sbjct 1527 GACACTATTGAAAATGTAAAGGCCAAAATTCAAGATAAAGAAGGTATTCCCCCAGATCAA 1468 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | || ||||| || | |||||| | || || || ||||| || Sbjct 1467 CAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 1408 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTA 156035 || || ||| ||| | || |||||||| || ||| Sbjct 1407 AT-TCAAAAGGAGTCTACCCTTCATTTGGTCTTA 1375 Score = 114 bits (126), Expect = 2e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| |||||||||||||| || || || || || ||| || Sbjct 1359 ATGCAGATTTTCGTGAAAACGTTGACTGGAAAAACCATCACCTTGGAGGTAGAACCATCA 1300 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || ||| || |||||||| ||||| || |||||||| ||| Sbjct 1299 GATACCATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCTCCAGACCAA 1240 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | |||||||||||| | || ||| | || | || || || | Sbjct 1239 CAACGTTTGATCTTCGCCGGTAAGCAGTTGGAGGATGGTCGCACCCTCTCTGACTACA-- 1182 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 ||||||||| || | || |||||||| ||||| Sbjct 1181 ATATCCAAAAGGAATCCACCCTTCATTTGGTGTT 1148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730065099516000