Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq64788 181 2e-40 seq91934 156 8e-33 seq125840 150 4e-31 seq177482 127 4e-24 >seq64788 Length=4825 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||||| || || || | || | |||||| ||| || ||||| Sbjct 1586 ATACCACCGCGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCG 1645 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| ||||||||||||||||| || ||||| | ||||||||| || Sbjct 1646 GACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGG 1705 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| ||| ||||| ||| | ||| || | ||| Sbjct 1706 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCG 1765 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||||| ||||| || ||||||||||||| ||||| ||||| Sbjct 1766 ACCTCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 170 bits (188), Expect = 4e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | |||||||| || ||||| | |||| ||| ||| || || || ||||| Sbjct 1358 ATACCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGA-ATGTTGTAATC 1416 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || ||||| ||| |||| ||||||||||||||||| |||||||| | |||||||| || Sbjct 1417 GGACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGG 1476 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || |||||||||||||| ||||| |||||||| |||| || || | ||| Sbjct 1477 GGGAATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTC 1536 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||| ||||| || || || || |||| || |||||||| Sbjct 1537 AACTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | | ||||||||| ||||| || |||| ||||| ||||| |||||| Sbjct 1814 ATGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCA 1873 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || | || |||||||||||||| || || || || | |||||||| || Sbjct 1874 GACAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGA 1933 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| |||||| ||| ||||| |||| ||| || | || Sbjct 1934 GGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCA 1993 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || |||||||| ||||| ||||| || | ||| || ||||| Sbjct 1994 ACCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||||| || ||||| | ||||| ||||| || || ||||| Sbjct 2042 ATACCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCG 2101 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| | || || | ||||||||| ||||| |||| | |||||||| || Sbjct 2102 GACAAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGG 2161 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| |||||| || ||||| |||| ||| || | ||| Sbjct 2162 GGAATGCCCTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCG 2221 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || |||| || ||||| || ||||||||||| || | || || |||||||| Sbjct 2222 ACCTCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATTTT 2274 >seq91934 Length=4437 Score = 156 bits (172), Expect = 8e-33 Identities = 471/724 (65%), Gaps = 21/724 (3%) Strand=Plus/Minus Query 49637 CAATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATT 49696 |||| || ||| || | ||| ||||||||||||| ||||| ||||| |||| |||||| Sbjct 3583 CAATTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATT 3524 Query 49697 CATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagc 49756 ||| || | || || | || || || || | || |||| ||| |||| |||||| Sbjct 3523 CATGCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGC 3464 Query 49757 ttgtttaattatcataattatattattttt--tgataatttatatttaatatgattcgca 49814 || | ||||| |||| | | || | || |||| ||| | || | Sbjct 3463 TTCCGTTATTATTTCGGTTATTCTCTCACGGCTGGGACGTTGTATTAAATGT--TT---A 3409 Query 49815 tatattaa-ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACT 49873 | ||||| ||| ||||||||| ||||||||||||||| | ||| || || ||||| Sbjct 3408 AACATTAACACA-GCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGA 3350 Query 49874 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 49933 || || | || ||||| | || | || || ||||||||||| || |||||||| | Sbjct 3349 GAATGTAAGGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCC 3290 Query 49934 AGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA---- 49989 | ||||| || ||||| ||| |||||||| || || | | | ||||| ||| Sbjct 3289 ACTGAAGAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAA-ATTGGCCG 3231 Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 |||| | | | ||| |||| || |||||||| || || || | || || || Sbjct 3230 ATTT-TGAGCCAAT--CCAAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCG 3174 Query 50050 TTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTA 50109 |||| || || ||||| | | || || | || | Sbjct 3173 TTTCAATGGCATTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCA 3114 Query 50110 ATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTC 50169 | | | |||||||||||| |||||| |||||| || ||||| || ||| || | Sbjct 3113 AAATACTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGC 3054 Query 50170 TTGCTTCTGAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAAT 50227 ||| |||| | || || || || ||| | |||||||| | ||| ||| ||||| Sbjct 3053 GTGCCTCTGTAACTTGTACCTCTTGGGAAAAA--CGTTCAACAAGATTTTCATTGACAAT 2996 Query 50228 ACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTT 50287 |||||| || || || ||||| || | ||| | | ||||| | ||||| || | Sbjct 2995 ACCATCGGAAGCAGCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGT 2936 Query 50288 TAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGA 50347 | |||||||| | ||| || || | |||||||||||||| |||||||| || Sbjct 2935 GAGTTTTTCCCAGTCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGA 2876 Query 50348 TGCT 50351 |||| Sbjct 2875 TGCT 2872 >seq125840 Length=3442 Score = 150 bits (166), Expect = 4e-31 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| |||||||| | |||||| | ||| |||||||| || | || || ||||| Sbjct 775 GTTCAATGATACCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATAT 716 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || || || || || |||| |||||||||||||| || ||||| || | |||| Sbjct 715 TGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTT 656 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| || || || |||||||| ||||| |||||| || ||||| || | || Sbjct 655 GATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGT 596 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | | || ||||| | |||||||| ||||||||||| ||||| | || |||||||| Sbjct 595 AAGGCTCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538 >seq177482 Length=2829 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || ||||| || || || || | ||||| ||||| || || || Sbjct 1654 ACCACCACGAAGGCGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGA 1595 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||| || |||| |||||||| || |||||||| || || | || ||||| ||||| Sbjct 1594 AAGTGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGG 1535 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| || || || || ||| ||||| |||| || || | ||| || Sbjct 1534 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGAC 1475 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| ||||| || | ||||| | ||||||||||| Sbjct 1474 CTCAAGAGTGATGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCAT 1427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981988677988500