Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq64788 181 2e-40
seq91934 156 8e-33
seq125840 150 4e-31
seq177482 127 4e-24
>seq64788
Length=4825
Score = 181 bits (200), Expect = 2e-40
Identities = 178/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | |||||||| || || || | || | |||||| ||| || |||||
Sbjct 1586 ATACCACCGCGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCG 1645
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| ||||| ||| |||| ||||||||||||||||| || ||||| | ||||||||| ||
Sbjct 1646 GACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGG 1705
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| ||||| |||||| ||| ||||| ||| | ||| || | |||
Sbjct 1706 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCG 1765
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| |||| ||||| ||||| || ||||||||||||| ||||| |||||
Sbjct 1766 ACCTCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815
Score = 170 bits (188), Expect = 4e-37
Identities = 178/231 (77%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
|||||||| | |||||||| || ||||| | |||| ||| ||| || || || |||||
Sbjct 1358 ATACCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGA-ATGTTGTAATC 1416
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
|| ||||| ||| |||| ||||||||||||||||| |||||||| | |||||||| ||
Sbjct 1417 GGACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGG 1476
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || |||||||||||||| ||||| |||||||| |||| || || | |||
Sbjct 1477 GGGAATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTC 1536
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||||| ||||| ||||| || || || || |||| || ||||||||
Sbjct 1537 AACTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587
Score = 149 bits (164), Expect = 1e-30
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | | ||||||||| ||||| || |||| ||||| ||||| ||||||
Sbjct 1814 ATGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCA 1873
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| ||||| || | || |||||||||||||| || || || || | |||||||| ||
Sbjct 1874 GACAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGA 1933
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| |||||||| || ||||| |||||| ||| ||||| |||| ||| || | ||
Sbjct 1934 GGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCA 1993
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | || |||||||| ||||| ||||| || | ||| || |||||
Sbjct 1994 ACCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043
Score = 141 bits (156), Expect = 2e-28
Identities = 171/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | |||||||| || ||||| | ||||| ||||| || || |||||
Sbjct 2042 ATACCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCG 2101
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| || || ||| | || || | ||||||||| ||||| |||| | |||||||| ||
Sbjct 2102 GACAAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGG 2161
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || |||||||| |||||| || ||||| |||| ||| || | |||
Sbjct 2162 GGAATGCCCTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCG 2221
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| |||| || ||||| || ||||||||||| || | || || ||||||||
Sbjct 2222 ACCTCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATTTT 2274
>seq91934
Length=4437
Score = 156 bits (172), Expect = 8e-33
Identities = 471/724 (65%), Gaps = 21/724 (3%)
Strand=Plus/Minus
Query 49637 CAATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATT 49696
|||| || ||| || | ||| ||||||||||||| ||||| ||||| |||| ||||||
Sbjct 3583 CAATTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATT 3524
Query 49697 CATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagc 49756
||| || | || || | || || || || | || |||| ||| |||| ||||||
Sbjct 3523 CATGCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGC 3464
Query 49757 ttgtttaattatcataattatattattttt--tgataatttatatttaatatgattcgca 49814
|| | ||||| |||| | | || | || |||| ||| | || |
Sbjct 3463 TTCCGTTATTATTTCGGTTATTCTCTCACGGCTGGGACGTTGTATTAAATGT--TT---A 3409
Query 49815 tatattaa-ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACT 49873
| ||||| ||| ||||||||| ||||||||||||||| | ||| || || |||||
Sbjct 3408 AACATTAACACA-GCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGA 3350
Query 49874 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 49933
|| || | || ||||| | || | || || ||||||||||| || |||||||| |
Sbjct 3349 GAATGTAAGGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCC 3290
Query 49934 AGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA---- 49989
| ||||| || ||||| ||| |||||||| || || | | | ||||| |||
Sbjct 3289 ACTGAAGAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAA-ATTGGCCG 3231
Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049
|||| | | | ||| |||| || |||||||| || || || | || || ||
Sbjct 3230 ATTT-TGAGCCAAT--CCAAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCG 3174
Query 50050 TTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTA 50109
|||| || || ||||| | | || || | || |
Sbjct 3173 TTTCAATGGCATTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCA 3114
Query 50110 ATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTC 50169
| | | |||||||||||| |||||| |||||| || ||||| || ||| || |
Sbjct 3113 AAATACTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGC 3054
Query 50170 TTGCTTCTGAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAAT 50227
||| |||| | || || || || ||| | |||||||| | ||| ||| |||||
Sbjct 3053 GTGCCTCTGTAACTTGTACCTCTTGGGAAAAA--CGTTCAACAAGATTTTCATTGACAAT 2996
Query 50228 ACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTT 50287
|||||| || || || ||||| || | ||| | | ||||| | ||||| || |
Sbjct 2995 ACCATCGGAAGCAGCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGT 2936
Query 50288 TAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGA 50347
| |||||||| | ||| || || | |||||||||||||| |||||||| ||
Sbjct 2935 GAGTTTTTCCCAGTCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGA 2876
Query 50348 TGCT 50351
||||
Sbjct 2875 TGCT 2872
>seq125840
Length=3442
Score = 150 bits (166), Expect = 4e-31
Identities = 176/238 (74%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358
||| ||| |||||||| | |||||| | ||| |||||||| || | || || |||||
Sbjct 775 GTTCAATGATACCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATAT 716
Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418
| || || || || || || |||| |||||||||||||| || ||||| || | ||||
Sbjct 715 TGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTT 656
Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478
|||| || || || |||||||| ||||| |||||| || ||||| || | ||
Sbjct 655 GATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGT 596
Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| | || ||||| | |||||||| ||||||||||| ||||| | || ||||||||
Sbjct 595 AAGGCTCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538
>seq177482
Length=2829
Score = 127 bits (140), Expect = 4e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| || ||||| || || || || | ||||| ||||| || || ||
Sbjct 1654 ACCACCACGAAGGCGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGA 1595
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
| ||| || |||| |||||||| || |||||||| || || | || ||||| |||||
Sbjct 1594 AAGTGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGG 1535
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||||||||| || || || || ||| ||||| |||| || || | ||| ||
Sbjct 1534 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGAC 1475
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| ||||| ||||| ||||| || | ||||| | |||||||||||
Sbjct 1474 CTCAAGAGTGATGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCAT 1427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981988677988500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |