Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq64788 167 4e-36 seq125840 129 1e-24 seq177482 127 4e-24 seq91934 125 1e-23 >seq64788 Length=4825 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || ||||| || || || | || | |||||| || || ||||| Sbjct 1586 ATACCACCGCGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCG 1645 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || ||||||||||||||||| |||||||| | |||||| || || Sbjct 1646 GACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGG 1705 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| ||| ||||| ||| ||||| || | ||| Sbjct 1706 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCG 1765 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||||| ||||| || ||||||||||||| |||||| ||||| Sbjct 1766 ACCTCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || ||||| || ||||| | |||| ||| || ||| || ||||| Sbjct 1358 ATACCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCG 1417 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || ||||||||||||||||| || ||||| | ||||| || || Sbjct 1418 GACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGG 1477 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| |||||||| ||||| || || | ||| Sbjct 1478 GGAATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCA 1537 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||| ||||| || || || || |||| ||| |||||||| Sbjct 1538 ACTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| |||| || ||||| | ||||| ||||| ||| || ||||| Sbjct 2042 ATACCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCG 2101 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| ||| |||| || | ||||||||| |||||||||| | ||||| || || Sbjct 2102 GACAAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGG 2161 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| |||||| || ||||| |||||||| || | ||| Sbjct 2162 GGAATGCCCTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCG 2221 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || |||| || ||||| || ||||||||||| || | ||| || |||||||| Sbjct 2222 ACCTCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATTTT 2274 Score = 136 bits (150), Expect = 7e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 |||||||| ||||| || |||| ||||| ||||| ||||| || || | || || Sbjct 1829 CGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCG 1888 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||||||||| || ||||| || | ||||| || || || |||||||| || Sbjct 1889 TCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTG 1948 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| ||| ||||| |||||||| || | || || || | || ||| Sbjct 1949 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATG 2008 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| || | || || ||||| Sbjct 2009 GTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 >seq125840 Length=3442 Score = 129 bits (142), Expect = 1e-24 Identities = 175/243 (72%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | ||| |||||||| || | || || ||||| || Sbjct 770 ATGATACCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAG 711 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || | || |||||||||||||| || || || || | ||||| || Sbjct 710 TCGGACAAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCT 651 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || |||||||| ||||| |||||| || ||||| || || || | | Sbjct 650 GGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGC 591 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTA 172076 || ||||| | |||||||| ||||||||||| ||||| | ||| ||||||| | ||| | Sbjct 590 TCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCA-TCTATAA 532 Query 172077 TAA 172079 ||| Sbjct 531 TAA 529 >seq177482 Length=2829 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || ||||| || || || || | ||||| |||||| || || || Sbjct 1654 ACCACCACGAAGGCGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGA 1595 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | || |||||||| || ||||||||||| || | || || || ||||| Sbjct 1594 AAGTGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGG 1535 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||| || || || || ||| ||||| ||||| || || | ||| || Sbjct 1534 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGAC 1475 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| ||||| ||||| || | ||||| | |||||||||||| Sbjct 1474 CTCAAGAGTGATGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCAT 1427 >seq91934 Length=4437 Score = 125 bits (138), Expect = 1e-23 Identities = 461/724 (64%), Gaps = 21/724 (3%) Strand=Plus/Minus Query 38939 CAATACATATAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATT 38998 |||| || ||| || | ||| || |||||||||| ||||| |||| |||| |||||| Sbjct 3583 CAATTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATT 3524 Query 38999 CATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagc 39058 ||| || | || || | || || || || | || |||| ||| |||| |||||| Sbjct 3523 CATGCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGC 3464 Query 39059 ttgtttaattatcataattatattattttt--tgataatttatatttaatatgattcgca 39116 || | ||||| |||| | | || | || |||| ||| | || | Sbjct 3463 TTCCGTTATTATTTCGGTTATTCTCTCACGGCTGGGACGTTGTATTAAATGT--TT---A 3409 Query 39117 tataGTAA-ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACT 39175 | | ||| ||| |||||||| ||||||||| ||||| | ||| || || ||||| Sbjct 3408 AACATTAACACA-GCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGA 3350 Query 39176 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 39235 || || | || ||||| | || | || || ||||||||||| || |||||||| | Sbjct 3349 GAATGTAAGGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCC 3290 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTA---- 39291 | ||||| || ||||||||| |||||||| || || | | | ||||| ||| Sbjct 3289 ACTGAAGAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAA-ATTGGCCG 3231 Query 39292 ATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATAT 39351 |||| | | | || ||||| || |||||||| || || || | || || || Sbjct 3230 ATTT-TGAGCCAA--TCCAAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCG 3174 Query 39352 TTTCTATAGCTTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 39411 |||| || || ||||| | | || Sbjct 3173 TTTCAATGGCATTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCA 3114 Query 39412 NNNNAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCC 39471 | |||||||||||| |||||| |||||| || ||||| || ||| || | Sbjct 3113 AAATACTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGC 3054 Query 39472 TTGCTTCTGAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAAT 39529 ||| |||| | || || || || ||| | |||||||| | ||| ||| ||||| Sbjct 3053 GTGCCTCTGTAACTTGTACCTCTTGGGAAAAA--CGTTCAACAAGATTTTCATTGACAAT 2996 Query 39530 ACCATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTT 39589 |||||| || || || ||||| || | ||||| | ||||| | ||||| || | Sbjct 2995 ACCATCGGAAGCAGCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGT 2936 Query 39590 TAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGA 39649 | |||||||| | ||| || || | |||||||||||||| ||||||||||| Sbjct 2935 GAGTTTTTCCCAGTCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGA 2876 Query 39650 TGCT 39653 |||| Sbjct 2875 TGCT 2872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902901332358000