Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq64788 167 4e-36
seq125840 129 1e-24
seq177482 127 4e-24
seq91934 125 1e-23
>seq64788
Length=4825
Score = 167 bits (184), Expect = 4e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || ||||| || || || | || | |||||| || || |||||
Sbjct 1586 ATACCACCGCGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCG 1645
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| || | ||| | || ||||||||||||||||| |||||||| | |||||| || ||
Sbjct 1646 GACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGG 1705
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| ||||| |||||| ||| ||||| ||| ||||| || | |||
Sbjct 1706 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCG 1765
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| |||| ||||| ||||| || ||||||||||||| |||||| |||||
Sbjct 1766 ACCTCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815
Score = 154 bits (170), Expect = 3e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || ||||| || ||||| | |||| ||| || ||| || |||||
Sbjct 1358 ATACCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCG 1417
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| || | ||| | || ||||||||||||||||| || ||||| | ||||| || ||
Sbjct 1418 GACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGG 1477
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||||||||| ||||| |||||||| ||||| || || | |||
Sbjct 1478 GGAATACCTTCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCA 1537
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||||| ||||| ||||| || || || || |||| ||| ||||||||
Sbjct 1538 ACTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587
Score = 154 bits (170), Expect = 3e-32
Identities = 174/233 (75%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||| |||| || ||||| | ||||| ||||| ||| || |||||
Sbjct 2042 ATACCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCG 2101
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| |||| ||| |||| || | ||||||||| |||||||||| | ||||| || ||
Sbjct 2102 GACAAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGG 2161
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || |||||||| |||||| || ||||| |||||||| || | |||
Sbjct 2162 GGAATGCCCTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCG 2221
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| |||| || ||||| || ||||||||||| || | ||| || ||||||||
Sbjct 2222 ACCTCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATTTT 2274
Score = 136 bits (150), Expect = 7e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914
|||||||| ||||| || |||| ||||| ||||| ||||| || || | || ||
Sbjct 1829 CGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCG 1888
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| |||||||||||||| || ||||| || | ||||| || || || |||||||| ||
Sbjct 1889 TCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTG 1948
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
||||| |||||| ||| ||||| |||||||| || | || || || | || |||
Sbjct 1949 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATG 2008
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| ||||| ||||| || | || || |||||
Sbjct 2009 GTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043
>seq125840
Length=3442
Score = 129 bits (142), Expect = 1e-24
Identities = 175/243 (72%), Gaps = 1/243 (0%)
Strand=Plus/Minus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|| |||||||| | ||| || | ||| |||||||| || | || || ||||| ||
Sbjct 770 ATGATACCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAG 711
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| || || | || | || |||||||||||||| || || || || | ||||| ||
Sbjct 710 TCGGACAAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCT 651
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
|| || || |||||||| ||||| |||||| || ||||| || || || | |
Sbjct 650 GGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGC 591
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTA 172076
|| ||||| | |||||||| ||||||||||| ||||| | ||| ||||||| | ||| |
Sbjct 590 TCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCA-TCTATAA 532
Query 172077 TAA 172079
|||
Sbjct 531 TAA 529
>seq177482
Length=2829
Score = 127 bits (140), Expect = 4e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901
|||||| | ||| || ||||| || || || || | ||||| |||||| || || ||
Sbjct 1654 ACCACCACGAAGGCGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGA 1595
Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961
| | || | || |||||||| || ||||||||||| || | || || || |||||
Sbjct 1594 AAGTGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGG 1535
Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021
||||||||||| || || || || ||| ||||| ||||| || || | ||| ||
Sbjct 1534 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGAC 1475
Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| ||||| ||||| ||||| || | ||||| | ||||||||||||
Sbjct 1474 CTCAAGAGTGATGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCAT 1427
>seq91934
Length=4437
Score = 125 bits (138), Expect = 1e-23
Identities = 461/724 (64%), Gaps = 21/724 (3%)
Strand=Plus/Minus
Query 38939 CAATACATATAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATT 38998
|||| || ||| || | ||| || |||||||||| ||||| |||| |||| ||||||
Sbjct 3583 CAATTCAACTAACAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATT 3524
Query 38999 CATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagc 39058
||| || | || || | || || || || | || |||| ||| |||| ||||||
Sbjct 3523 CATGCCAATCAAATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGC 3464
Query 39059 ttgtttaattatcataattatattattttt--tgataatttatatttaatatgattcgca 39116
|| | ||||| |||| | | || | || |||| ||| | || |
Sbjct 3463 TTCCGTTATTATTTCGGTTATTCTCTCACGGCTGGGACGTTGTATTAAATGT--TT---A 3409
Query 39117 tataGTAA-ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACT 39175
| | ||| ||| |||||||| ||||||||| ||||| | ||| || || |||||
Sbjct 3408 AACATTAACACA-GCAAAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGA 3350
Query 39176 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 39235
|| || | || ||||| | || | || || ||||||||||| || |||||||| |
Sbjct 3349 GAATGTAAGGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCC 3290
Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTA---- 39291
| ||||| || ||||||||| |||||||| || || | | | ||||| |||
Sbjct 3289 ACTGAAGAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCACCAAA-ATTGGCCG 3231
Query 39292 ATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATAT 39351
|||| | | | || ||||| || |||||||| || || || | || || ||
Sbjct 3230 ATTT-TGAGCCAA--TCCAAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCG 3174
Query 39352 TTTCTATAGCTTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 39411
|||| || || ||||| | | ||
Sbjct 3173 TTTCAATGGCATTAAAGAGATAATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCA 3114
Query 39412 NNNNAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCC 39471
| |||||||||||| |||||| |||||| || ||||| || ||| || |
Sbjct 3113 AAATACTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGC 3054
Query 39472 TTGCTTCTGAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAAT 39529
||| |||| | || || || || ||| | |||||||| | ||| ||| |||||
Sbjct 3053 GTGCCTCTGTAACTTGTACCTCTTGGGAAAAA--CGTTCAACAAGATTTTCATTGACAAT 2996
Query 39530 ACCATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTT 39589
|||||| || || || ||||| || | ||||| | ||||| | ||||| || |
Sbjct 2995 ACCATCGGAAGCAGCAAAGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGGT 2936
Query 39590 TAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGA 39649
| |||||||| | ||| || || | |||||||||||||| |||||||||||
Sbjct 2935 GAGTTTTTCCCAGTCCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGA 2876
Query 39650 TGCT 39653
||||
Sbjct 2875 TGCT 2872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 902901332358000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |