Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq41982 138 3e-27 seq26233 123 7e-23 seq197411 98.7 3e-15 seq31867 98.7 3e-15 seq2321 96.9 1e-14 seq195284 86.0 2e-11 >seq41982 Length=5201 Score = 138 bits (152), Expect = 3e-27 Identities = 707/1116 (63%), Gaps = 25/1116 (2%) Strand=Plus/Minus Query 155400 AATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTA-ATTGCTCCT 155458 ||||||||||| | |||||| || || || || | || ||||| | ||| ||| | Sbjct 2637 AATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGAC-GTAGATTAGATTT 2579 Query 155459 GCTTGTCTTCTTGTTTGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAA 155518 || | || | || ||||| || | || || || || || | |||| | | Sbjct 2578 CCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGATTTTTGGTAAT 2519 Query 155519 TACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACAT 155578 || || || || | | ||||||| | |||| |||||||| || | |||||||| Sbjct 2518 GACTTTAGTAACATTTTTTAATTTCTTAAAGTCGAATGTTTTTTCAGGCGTCACAAACAT 2459 Query 155579 ACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTAC 155638 | ||| | || || |||| |||||| || || |||| | | || || ||||| Sbjct 2458 ATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGGGTGCGGAATACTCTAC 2399 Query 155639 AATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACT 155698 ||| || |||| |||| | ||| || ||||| | ||| | ||||||| |||| Sbjct 2398 AATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGCTGGTTACTCTTACG 2339 Query 155699 GTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 ||||| ||||||||||| | ||||| || || ||||| || | || || || | || Sbjct 2338 ATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTCTACTTGAGCTTCAATTAT 2279 Query 155759 CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTT 155818 | ||| || | |||| || | ||| | ||||||| ||||| || Sbjct 2278 GGCAAACCAAAGAGCCTGGGCCTTGACGGTACGGTTTGCTTTGCCTTCATTTTCATACTT 2219 Query 155819 CATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGG 155878 |||||| | | | ||| |||| || || ||| ||||| || || | ||| Sbjct 2218 GGTATACAATTCTTCGAATTCCGCACCCCAAACTTCCTGCAGACCAGGACATTTGTGGGG 2159 Query 155879 GCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCA 155938 || | | ||||||| | ||| | ||| | | |||||| | ||| ||| Sbjct 2158 ACACATTAACGACCAATCTCCATTTTCTTCTACTCTTTTCATAAACAAATCGGGTATCCA 2099 Query 155939 AATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCT 155997 | |||||||| || || || || || || ||| || | |||| ||| ||| || | Sbjct 2098 CAGGGCATAGAATAGATCTCTAGCTCTGTG-CTCTTCCTTGCCGGTATTTTTCTTTAAAT 2040 Query 155998 CTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA-ACTACCATTC 156056 | || ||||| |||||| | ||| ||||||| ||| || ||||| || | | Sbjct 2039 CCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATGGCAAATGCTCCTGGAC 1980 Query 156057 CTCT--TGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAA 156114 | | ||| || ||||||||||| || ||| || || || || | ||||| || | Sbjct 1979 GTTTGCCGCCGCCTTGATCTACATAGCGGGCAACATTGTTAAACACCCTAAGCATGGGCA 1920 Query 156115 TAATACCATTGGAAGTGCCATTGGTTCC-GCGA---ATATGC----GAACCAGATG-AGC 156165 | ||||| || ||||| || || || ||| | ||| | || ||| || Sbjct 1919 CCAGTCCATTTGAGGTGCCGTTAGTACCATCGATGGAAGTGCCCTTGGCCCTTATGCAGT 1860 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 | || ||| ||| ||||||||||| | |||| ||||| ||||||| | Sbjct 1859 GCACGTTA-----ATG----CCAATACCACCAGCAGATTTGGAAATCATGGCGCATTGTT 1809 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAAC 156285 || | |||||||||||||||||||||||| | |||| | | || ||||||| Sbjct 1808 CCACTGACTTGAAAATACCTTCAATAGAATCAGCCACCATGGTCAAAAGGAAGCACGATG 1749 Query 156286 TTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACT 156345 ||||| ||||| || || |||| || | || || | ||||| ||||||| Sbjct 1748 ACAATTGTGGTCGCGGGGTAGCAGCAGCAAACAAAGTGGGCGAGGCATGTGTAAAATAAC 1689 Query 156346 TATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGA 156405 | ||||| | | || || || | | || | | | || || |||| | Sbjct 1688 GCTCAGACAACAAGTTATAAGTTTCGATGGCCGAATCTATGTCATCTCCATGTATACCTA 1629 Query 156406 TAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAA 156465 ||| || ||||| |||||||||| || | || |||||| |||| ||| ||| | Sbjct 1628 TAGCTACTCTCATTAACATATGCTGTGGTCTTTCAACAATCTTACCATTCATTTTCAGCA 1569 Query 156466 GGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAAT 156501 || | | ||||| || || || || ||||||| Sbjct 1568 AATAGGATCTCTCCAGTGTCTTGAATCCAAAATAAT 1533 >seq26233 Length=4557 Score = 123 bits (136), Expect = 7e-23 Identities = 210/299 (70%), Gaps = 14/299 (5%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| |||||||||||| || || |||||||| ||| Sbjct 1892 TCCATAGCCTTTATAAGACGACGCTGGATATAACCAGTTTCAGCAGTCTTTACAGCAGTA 1951 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG---- 302690 ||||| ||||| |||||||||||||||| |||| ||||| || ||| | || Sbjct 1952 TCAATAAGACCTTCACGACCACCCATAGCGTGGA--AATAGAACT--CGGAAGGAGTCAA 2007 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTT 302747 || | | | | || | || |||||||| | | ||| || || ||||||| || Sbjct 2008 ACCGGCCAGATATGAATTTTCGACGAAACCTCTGGACTCAGGACCGTAATCGTC---TTT 2064 Query 302748 GGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTT 302807 | | || |||||||| || | || | || ||||| ||||| || || || ||||| Sbjct 2065 GATGAAATGTGGCAGAGTACGCTTGCGGAAACCATATGGAATACGTTTACCTTCTACGTT 2124 Query 302808 CTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866 ||| || |||| || | ||| | ||| |||||||| | | |||||||| |||| Sbjct 2125 CTGTTGACCCACACAAGCAATAACCTGGGAAATATTAATGTTGGAACCCTTGGAACCAG 2183 Score = 86.0 bits (94), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||| | || ||| || ||||| |||||||||| |||||| | ||||||||||| Sbjct 1023 AATTTCCTTAAGACGAGGTACACCCAGGGTTACGTT---CTTGGAGGATACACCAGCAAA 1079 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 |||||||| ||||| || | || || | |||||||| | ||| || || || | Sbjct 1080 ATGGAAAGTGTTCAGTGTCATCTGTGTGGCAGGCTCACCCAAACTCTGGGCAGCCAAGGC 1139 Query 301935 ACCAACCATTTCTCCTGG 301952 ||| |||||||| || || Sbjct 1140 ACCCACCATTTCACCGGG 1157 >seq197411 Length=2406 Score = 98.7 bits (108), Expect = 3e-15 Identities = 210/311 (68%), Gaps = 16/311 (5%) Strand=Plus/Plus Query 251410 AGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCC 251469 |||||||| |||||| ||||| | || ||| | ||| || | ||| | || || Sbjct 3 AGACCACAGAAATTACAGACATGTATGCGGTAGGGATCGGAGACTTCAAAGAGACG---- 58 Query 251470 TTGGTGAAGCGA----GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAA 251525 || | | || | | |||||||| || ||| ||||||||| |||||||||||||| Sbjct 59 TTCGCGCAGAAATTGTGCAGCACCGTGAGATATCTGACAATCACGTTCCATTTCACCGAA 118 Query 251526 ACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGG 251585 ||| ||||||||||| ||||| || ||||| ||| || || ||| | | || Sbjct 119 ACGTAGACCACCATCACGAGCTCTGCCCTCCATAGGTTGTCGCACCAGAATCTGTACTGG 178 Query 251586 ACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGC 251645 ||| | | ||| || || || | |||||||| ||||||||||| ||| | | Sbjct 179 ACCACGAGCTCTGCTGTGAATTTTGTCGTCCACCATATGTTTGAGACGCTGATAGTAAGT 238 Query 251646 GGGACCGATGAAGATGCTCGAAGGC----ATTTGCTCTCCAGTTAGAGCGTTATACATAA 251701 ||| || | ||| | || | ||| |||| ||| || || |||||||||| | Sbjct 239 GGGTCCCAAGAAAA--CTTG--GGCATTAATTTTACGTCCTGTATGACCGTTATACATGA 294 Query 251702 CTTCGTTTCCA 251712 |||| || ||| Sbjct 295 CTTCATTGCCA 305 >seq31867 Length=6999 Score = 98.7 bits (108), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 303620 CTTCATCTTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCT 303679 ||||| ||| |||| ||| |||||| || ||||| ||||||||||||||||| |||| Sbjct 3410 CTTCACTTTGTGGCAAATGGGCATTCATTTCGTCACCATCAAAATCAGCATTATA-GGCT 3468 Query 303680 TTG-TGTCCGCAACGTTCATCCGGAAAG---TATCACCCTGCATCATAACACGGGCTTTA 303735 ||| || | || || ||||||| | |||||||| || || ||| ||||| Sbjct 3469 TTGCAGTTAGAGTAGTGCAGACGGAAAGTCTTTTCACCCTG---CAAAATACGAGCTTTG 3525 Query 303736 TGACACATCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACCG 303795 || ||| || || ||| || |||| ||| |||||||| | ||||| || ||| Sbjct 3526 TGGGCCATAATTGAGGGTCTATGCAGAGATGGTTGACGATTCAGAAGCAACACATCTCCG 3585 Query 303796 TTTAATACATGACGATGAAC 303815 |||| || ||||||||||| Sbjct 3586 TTTAGGACGTGACGATGAAC 3605 >seq2321 Length=13729 Score = 96.9 bits (106), Expect = 1e-14 Identities = 90/114 (79%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||| ||||||| || ||||| |||| | ||| | |||| || ||||||||||| Sbjct 763 AATTTCCACAATACGTGGCACACCCTGGGTAATGTT---CATGGAAGCTACACCAGCAAA 707 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGC 301928 |||||||| ||||| || | |||||| ||||||||||||||||| ||||| Sbjct 706 ATGGAAAGTTTTCAGGGTCATTTGAGTGCCCGGCTCACCAATACTTTGAGCCGC 653 >seq195284 Length=2243 Score = 86.0 bits (94), Expect = 2e-11 Identities = 208/315 (66%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||||||||| ||||| || ||||| | | ||| |||| ||||| | || ||||| Sbjct 1381 ACCAACAGCATCGATTTCATCTATGAACAGAATACAAGGAGCATTTTTGCGTGCCATTGC 1440 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | || | || | || | || | ||||||| ||||||| | ||| || || | Sbjct 1441 AAACATATCACGCACTCTTGAGGGACCCACACCAACAAACATTTCCAAAAACTCTGATCC 1500 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 ||| || ||| || | || || ||||| ||||| || | || || | ||| || Sbjct 1501 GGAAACCGTAATAAAAGGCACGTTAGCTTCTCCTGCGGTGGCTTTGGCGAGTAATGTTTT 1560 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||| || ||||| || || || | | || || |||| |||||| || | | Sbjct 1561 ACCCGTGCCAGGAGGACCAGTCAACATGGCACCTTTCGGTATTTTTGCTCCTAAATCAAT 1620 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 || | | ||| | || | ||| | |||| |||| | |||| ||| ||||| || Sbjct 1621 GTACTGTTGAGGATTTTTGAGAAAATTAACAAATTCCATGATTTCAATTTTAGCCTCTTC 1680 Query 289329 ACATCCTGCTACATC 289343 || || || ||||| Sbjct 1681 GCAACCAGCAACATC 1695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1468093022980870