Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq177482 152 4e-32 seq64788 147 2e-30 seq125840 138 9e-28 seq54036 95.1 9e-15 >seq177482 Length=2829 Score = 152 bits (168), Expect = 4e-32 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| ||||| || | || |||||||||||||| || || || | || |||||| | Sbjct 1641 CGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGTGCGACCA 1582 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| || |||||| | ||||| | ||||||||| || ||||| || |||||| Sbjct 1581 TCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTG 1522 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | ||||||| |||| | |||||| || |||| || |||||||| || Sbjct 1521 TCCTG-AATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGAT 1463 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | |||||| || ||||||||||| Sbjct 1462 GGTCTTACCCGTCAGGGTTTTGACGAATATCTGCAT 1427 >seq64788 Length=4825 Score = 147 bits (162), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| || ||||||||||||||||| ||||| | | ||||| Sbjct 2056 ACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCC 2115 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || |||||||| || ||| | || | | ||| ||||| || ||||| ||||| || Sbjct 2116 GTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTT 2175 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | |||||| |||| | ||| ||||| |||| || || | || | Sbjct 2176 ATCTTG-AATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGA 2234 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || ||||||||||| || || || || || |||||||| Sbjct 2235 TGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATTTT 2274 Score = 141 bits (156), Expect = 7e-29 Identities = 161/211 (76%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATCATC 29636 ||||||||||| || || || ||||||||||| ||||| | |||| || || ||| || Sbjct 1379 ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAAT-GTACGTCCATCTTC 1437 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 | |||||| ||||| | || || | ||| ||||| || |||||||| ||||| ||||| Sbjct 1438 CAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTATCTTG 1497 Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 |||||| | || ||| |||| | |||||| || |||| ||||| | || || |||| Sbjct 1498 -AATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAATTGTTT 1556 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| ||||| || |||||||| Sbjct 1557 TTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 132 bits (146), Expect = 4e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATCATC 29636 ||||| ||||| || || |||||||| ||||| ||||| | ||||| | || ||| || Sbjct 1607 ACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATG-TACGTCCATCTTC 1665 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 | |||||| ||||| | || || | || ||||| || |||||||| ||||||||||| Sbjct 1666 CAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTG 1725 Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 | ||| ||| ||| |||||| || || || |||| || || | || || ||||| Sbjct 1726 GATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGTTTT 1785 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| |||||||| ||||| ||||| Sbjct 1786 TCCCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||| || || ||||| || |||||||| || ||||| | | || || Sbjct 176 ACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCC 235 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || || | ||||| | |||||| || || |||||||| || || Sbjct 236 ATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTT 295 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || |||||| | ||| ||| |||| | |||||||| |||| ||||| | || | Sbjct 296 ATCCTG-AATTTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGTGA 354 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||| ||||| ||||| || |||||||| Sbjct 355 TGGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || | |||||| | |||||||| | || ||||||||||| || || ||||| | | Sbjct 1817 CCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGAC 1876 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 ||| ||||| || || | |||||| || || | ||||| | ||| ||||| || || Sbjct 1877 AAT-GTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGG 1935 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || |||||||| |||||| | ||| ||| |||| | ||| || ||| | || | Sbjct 1936 GATTCCTTCCTTGTCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAA 1994 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | || || ||||||||||| || || || ||||| || ||||| Sbjct 1995 CCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||||||||| |||||||| ||||| || || || || | | ||||||| Sbjct 1144 ACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACC 1203 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || || | ||||| | ||| || || || || ||||| || || Sbjct 1204 ATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTT 1263 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || |||||| |||| | || || || ||||||| || | || || Sbjct 1264 ATCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTGAT 1323 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| || ||||| || || |||||||| Sbjct 1324 GGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 29641 TGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAAT 29700 || || ||||| | ||||| | |||||||||||| ||||| || || || || || | | Sbjct 18 TGCTTACCAGCGAAAATCAAACGTTGCTGATCCGGGGGAATGCCTTCCTTATCCTGGATT 77 Query 29701 TTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCA 29760 || ||||| |||| | || || ||| | |||||||| | || |||||||||||| Sbjct 78 TTAGCCTTGACGTTTTCAATGGTATCGGAAGGCTCTACTTCCAATGTGATAGTTTTGCCA 137 Query 29761 GTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||||||| || || ||||| Sbjct 138 GTCAAAGTTTTAACGAAGATTTGCAT 163 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTT 29715 ||||| | ||||||||| || |||||||| || || ||||| | ||| ||||| || Sbjct 726 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGGATTTTAGCCTTGACGTTT 785 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | ||| ||||| |||| || || | || |||||||||||||| ||||| || ||| Sbjct 786 TCAATAGTATCAGAGGGTTCAACCTCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTCACA 845 Query 29776 AATATCTGCAT 29786 || || ||||| Sbjct 846 AAGATTTGCAT 856 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 29664 TTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGT 29723 ||||||||| || |||||||| || || ||||| | ||| ||||| |||| | ||| Sbjct 1009 TTGCTGATCTGGGGGAATACCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCAATAGT 1068 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||||| |||| || || | || |||||||||||||| ||||| || ||||| || || Sbjct 1069 ATCAGAGGGTTCAACCTCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTCACAAAGATTTG 1128 Query 29784 CAT 29786 ||| Sbjct 1129 CAT 1131 >seq125840 Length=3442 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | |||||||| ||||| || || || || | | ||||||| Sbjct 753 ACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACC 694 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| || || | ||||| | ||| ||||| || |||||||| ||||| Sbjct 693 ATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTT 634 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| |||||| |||| | ||||| || | || ||||| | || || Sbjct 633 GTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAAT 574 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||||||| ||||| || || |||||||| Sbjct 573 GGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538 >seq54036 Length=9543 Score = 95.1 bits (104), Expect = 9e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 88949 GGTTTGCATGGTTTTCATGTGCACGAATATGGCGACACGAGTAACGGATGCACGTCGGCG 89008 ||||| |||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||| Sbjct 2036 GGTTTACATGGTTTCCATGTTCACGAATTTGGTGACAATACTAACGGCTGCACATCGGCT 1977 Query 89009 GGCGAACATTTCAATCCCACGGGCATGGATCACGGCGCGCCCGACGCTTTAATGAAACAT 89068 || ||||||||| ||| |||| ||| || || || || | | | || | |||| Sbjct 1976 GGTCCACATTTCAACCCCTGTGGCAAGGAACATGGTGCACCTGGTGATGAAAATAGACAT 1917 Query 89069 GTTGGTGATTTGGGAAA 89085 || ||||||||||| || Sbjct 1916 GTAGGTGATTTGGGCAA 1900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384291918398910