Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq64788 109 5e-19 >seq64788 Length=4825 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||| || || || |||||||| || | ||| ||| | ||||| | Sbjct 1154 AAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACCA-TCCTCCAA 1212 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || | || || ||||| |||||||| |||||||| || ||| Sbjct 1213 CTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGGAT 1272 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| || || | || || || || | ||||| |||||| || Sbjct 1273 CTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTGATGGTTTTTCC 1332 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||||||||| Sbjct 1333 AGTCAACGTTTTCACGAAAATCTGCAT 1359 Score = 102 bits (112), Expect = 8e-17 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || |||||||||||| || || | | | || || | |||||| || Sbjct 195 GTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCCA-TCTTCCAACTGCTTACC 253 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || |||||||| || || || |||||||| || ||| ||| |||| Sbjct 254 GGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTATCC-TGAATTTTAGCTT 312 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | || || || || | ||||| ||||||||| |||| | Sbjct 313 TAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGTGATGGTTTTGCCAGTCAAGG 372 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 373 TCTTAACGAAAATCTGCAT 391 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || || ||||| |||||||||||||| || ||| | ||| || | Sbjct 1838 AAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCCAAT 1897 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| |||| | || || || || |||||||| ||||||||||| ||| Sbjct 1898 TGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTC-TTGAAT 1956 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | | | |||| || |||| ||||| || || | ||||| ||||||||| Sbjct 1957 TTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTTGCC 2016 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || || ||||| Sbjct 2017 AGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || | |||||| || ||| |||| | || ||||| || || || ||||||||||| Sbjct 9 TCTTCCAACTGCTTACCAGCGAAAATCAAACGTTGCTGATCCGGGGGAATGCCTTCCTTA 68 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||| | |||| || |||| ||||| || || | |||| Sbjct 69 TCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGCTCTACTTCCAATGTGATA 128 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||||||| |||| |||||| ||||| || |||||| Sbjct 129 GTTTTGCCAGTCAAAGTTTTAACGAAGATTTGCATG 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482227294472400