Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq41982 143 6e-29 seq197078 96.9 8e-15 seq160250 86.0 1e-11 >seq41982 Length=5201 Score = 143 bits (158), Expect = 6e-29 Identities = 325/486 (67%), Gaps = 11/486 (2%) Strand=Plus/Plus Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| |||||| || || ||| | || || || ||| | ||| ||||| ||||| Sbjct 1907 TCAAATGGACTGGTGCCCATGCTTAGGGTGTTTAACAATGTTGCCCGCTATGTAGATCAA 1966 Query 110736 GGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 || || | | | || ||||||| || ||| | || ||||||||||||||||| Sbjct 1967 GGCGGCGGCAAACGTCCAGGAGCATTTGCCATTTATTTGGAGCCTTGGCATTCAGATATT 2026 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 |||||||| || || | |||||| || ||||| || ||||| | ||| || Sbjct 2027 TTTGAATTTTTGGATTTAAAGAAAAATACCGGCAAGGAAGAGCACAGAGCTAGAGATCTA 2086 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGG 110912 || ||||| ||||||| | ||||| || |||||| | || |||||||||| ||| Sbjct 2087 TTCTATGCCCTGTGGATACCCGATTTGTTTATGAAAAGAGTAGAAGAAAATGGAGATTGG 2146 Query 110913 TCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAA 110972 || | |||||||| || | ||||||||| || || | || || || ||| Sbjct 2147 TCGTTAATGTGTCCCCACAAATGTCCTGGTCTGCAGGAAGTTTGGGGTGCGGAATTCGAA 2206 Query 110973 GACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAAC---AAATTCCA-GCTCA 111028 || | || || |||||||| |||||||| |||||| | || | || || Sbjct 2207 GAATTGTATACCAAGTATGAAAATGAAGGCAA----AGCAAACCGTACCGTCAAGGCCCA 2262 Query 111029 AGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTA 111088 | |||||||| || ||||| | ||||| ||||| || ||||| || || ||||| Sbjct 2263 GGCTCTTTGGTTTGCCATAATTGAAGCTCAAGTAGAAACAGGTACTCCCTACATGTTGTA 2322 Query 111089 TAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAA 111148 || ||| |||||| || ||| || ||| | || || ||||||| ||||| Sbjct 2323 CAAGGATGCCTGTAATCGTAAGAGTAACCAGCAAAATATTGGCACTATTAAGTGCAGTAA 2382 Query 111149 TTTGTG 111154 ||||| Sbjct 2383 CTTGTG 2388 >seq197078 Length=1517 Score = 96.9 bits (106), Expect = 8e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | |||||| | ||||| || ||||||||||||| || ||| |||| ||| |||| Sbjct 436 GTTTTATTCAATCGTCAACCTTCTTTGCATAAAATGTCCATTATGTGTCATCAAGCCAAA 495 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | | || || || || |||| |||| ||||| || || ||||| ||| Sbjct 496 GTGCAGCCCCAAAGAACGTTCCGTTTCAATGAGTGTGCCTGTACTCCCTACAATGCTGAT 555 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||| |||||||||||| | ||| |||| ||| Sbjct 556 TTTGATGGTGATGAAATGAATTTACATTTACCCCAA 591 >seq160250 Length=3298 Score = 86.0 bits (94), Expect = 1e-11 Identities = 88/111 (79%), Gaps = 3/111 (3%) Strand=Plus/Plus Query 167245 CACC-ACCAGCATTATCGAATTCATTCGC-ATAATTTGGTGCTGAAAATACAGTAACTAA 167302 |||| ||| |||||||||||||| | | | ||||||||||||||| |||| ||||| | Sbjct 839 CACCTACCCGCATTATCGAATTC-TCCACAATAATTTGGTGCTGAGAATAATGTAACAAG 897 Query 167303 TTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 || ||| || || |||||||| || ||||| ||||||| ||| ||||| Sbjct 898 TTGACGTTTAGCGAAAAATTCATACCCGTCTTCGACAACTTGATGAGCACG 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183809455237110