Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq64788 145 5e-30 seq177482 123 2e-23 seq125840 122 6e-23 >seq64788 Length=4825 Score = 145 bits (160), Expect = 5e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | |||||| ||||| || || || ||||||||| |||||||||||||| Sbjct 1588 ACCACCGCGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGA 1647 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| ||| | || ||||||||||| || || ||||| |||||||| |||||| | || Sbjct 1648 CAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGG 1707 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| | || ||||| || | ||| || || ||| | Sbjct 1708 AATACCTTCTTTGTCTTGGATTTT-AGCTTTAACATTTTCTATGGTATCCGATGGTTCGA 1766 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || ||||| || ||||| ||||| || || || ||||| Sbjct 1767 CCTCTAATGTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 145 bits (160), Expect = 5e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||||||| |||||||| | || ||||||||||| |||||||| || Sbjct 1817 CCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGAC 1876 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| |||| ||||||||||| ||||| ||||||||||| || |||||| | || Sbjct 1877 AATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGG 1936 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | || ||||| || | || ||| | || || Sbjct 1937 ATTCCTTCCTTGTCTTGAATTTT-AGCTTTAACATTTTCAATAGTATCGGAAGGCTCAAC 1995 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || || || || || |||||||| |||||| Sbjct 1996 CTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCATA 2044 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | |||||| |||||||| || || ||| ||||| |||||||||||||| Sbjct 1360 ACCACCGCGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGA 1419 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| ||| | || ||||||||||| || || || || ||||| || |||||| | || Sbjct 1420 CAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGG 1479 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || |||||| | | |||| || | |||||| || ||| | Sbjct 1480 AATACCTTCTTTATCTTGAATTTT-GGCCTTTACATTTTCAATAGTGTCGGATGGTTCAA 1538 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| ||||| || || || || || ||||||||| Sbjct 1539 CTTCTAAGGTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCATA 1588 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || ||||| || |||||| ||| ||||| || ||||||||||| Sbjct 165 CCACCACGGAGACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAC 224 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || ||||| || || ||||| || |||||||| ||||| ||| | || Sbjct 225 AAAGTACGGCCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGA 284 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| || || |||||| | || ||||| || | |||||| || ||| || Sbjct 285 ATACCTTCCTTATCCTGAATTTT-AGCTTTAACATTTTCAATGGTGTCAGATGGTTCAAC 343 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || || || || || || || ||||||||| Sbjct 344 TTCCAAGGTGATGGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCATA 392 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||| |||||||| ||||| |||||||| |||||||||||||| Sbjct 2044 ACCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGA 2103 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| |||| || | |||||| ||||||||||| | ||| || |||||| | || Sbjct 2104 CAAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGG 2163 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || |||||| | | |||| || | || || || ||| | Sbjct 2164 AATGCCCTCCTTATCTTGAATTTT-AGCCTTGACATTTTCAATAGTATCAGATGGTTCGA 2222 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || ||||| || || || ||||| ||||| Sbjct 2223 CCTCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCAT 2271 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| ||||||||||| || ||| || ||||| || ||||| || || Sbjct 1132 ACCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGA 1191 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || ||||| || || ||||| || |||||||| || || ||| | || Sbjct 1192 GAGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGG 1251 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || || || | | |||| || | ||| || || ||| | Sbjct 1252 GATACCTTCCTTATCTTGGATCTT-AGCCTTGACATTTTCAATGGTATCTGATGGTTCTA 1310 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || |||||||| || || ||||||||| Sbjct 1311 CCTCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCATA 1360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| ||||||||||| || ||| || ||||| || ||||| || || Sbjct 857 ACCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGA 916 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || ||||| || || ||||| || |||||||| || || ||| | || Sbjct 917 GAGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGG 976 Query 33642 CACACCTTCTTTGTC 33656 | |||||| || || Sbjct 977 GATACCTTCCTTATC 991 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| ||||| ||| ||||| || ||||||||||| Sbjct 392 ACCACCACGGAGACGCAATACCAAATGAAGAGTTGACTCCTTTTGAATATTGTAATCGGA 451 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTG 33629 || ||||| | || ||||| || || ||||| || |||||||| || Sbjct 452 TAGAGTGCGACCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTG 499 >seq177482 Length=2829 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | || || ||||| || | || |||||||| || ||||| |||| Sbjct 1655 CACCACCACGAAGGCGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGG 1596 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | |||||||| | || |||||||| ||||| |||||||||||||| ||||||||| | | Sbjct 1595 AAAGTGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTG 1536 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| ||| || | || |||| || | ||||| | ||| Sbjct 1535 GAATTCCTTCTTTGTCCTGAATCTT-GGCTTTGACATTTTCGATAGTGTCCGAGGGTTCG 1477 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || ||||| || | ||||| || || |||||||| Sbjct 1476 ACCTCAAGAGTGATGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCAT 1427 >seq125840 Length=3442 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||||| ||| || ||||| || ||||| ||||| Sbjct 765 ACCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGA 706 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || ||||||||||| ||||| || |||||||| || |||||| | || Sbjct 705 CAAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGG 646 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| | | |||| || | ||||||| | || | Sbjct 645 AATACCTTCTTTGTCTTGGATTTT-AGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGA 587 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || ||||| ||||| ||||| || ||||||||||| Sbjct 586 CTTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327912759139200