Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq64788 125 2e-23 seq177482 95.1 3e-14 >seq64788 Length=4825 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || ||||| ||||| |||||||| ||| |||||||| | ||| || ||||| Sbjct 367 ACTGGCAAAACCATCACCTTGGAAGTTGAACCATCTGACACCATTGAAAATGTTAAAGCT 308 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| ||||| || || ||||| ||| || ||| ||| | | ||||||||||| || Sbjct 307 AAA-ATTCAGGATAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATCTTCGCCGGTAA 249 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||||||||||||||| | |||||| |||||||||| | || || ||||| ||||| || Sbjct 248 GCAGTTGGAAGATGGCCGTACTTTGTCCGATTACAATATTCAAAAGGAGTCCACTCTCCA 189 Query 206373 CCTTGTTTTGAGACTTCG 206390 | | || ||| | || || Sbjct 188 CTTGGTATTGCGTCTCCG 171 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||||||||| || || || ||||| ||| || ||||| | ||| |||||| Sbjct 1563 ACAGGAAAAACAATTACCTTAGAAGTTGAACCATCCGACACTATTGAAAATGTAAAGGCC 1504 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| |||||||| ||| || || ||| | | |||||||| || || Sbjct 1503 AAAATTCAAGATAAAGAAGGTATTCCCCCAGATCAACAACGTTTAATCTTCGCTGGTAAA 1444 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || |||||||||||| | || ||| ||||||||||| | || || |||||||| ||||| Sbjct 1443 CAATTGGAAGATGGACGTACATTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCA 1385 Score = 100 bits (110), Expect = 7e-16 Identities = 146/201 (73%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || || || || || ||| || || || | ||| Sbjct 1800 AAAACATTAACGGGAAAAACAATTACATTAGAGGTCGAACCATCGGATACCATAGAAAAT 1741 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300 || ||||| ||| || ||||| |||||||| ||| || || |||| || || || Sbjct 1740 GTTAAAGCTAAA-ATCCAAGACAAAGAAGGTATTCCCCCAGA---TCAACAGCGTTTAAT 1685 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 ||||| || || || |||||||||||| | || ||| ||||||||||| |||| ||||| Sbjct 1684 TTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAACATCCAAAAAGA 1625 Query 206361 GTCTACTCTTCACCTTGTTTT 206381 ||| || |||||| | || || Sbjct 1624 GTCGACCCTTCACTTGGTCTT 1604 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | || |||||||| ||||| ||||| || ||| || || || | ||| Sbjct 1344 AAAACGTTGACTGGAAAAACCATCACCTTGGAGGTAGAACCATCAGATACCATTGAAAAT 1285 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| || || ||| ||| | | |||||| Sbjct 1284 GTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCTCCAGACCAACAACGTTTGATCTTC 1225 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||||||||| ||||| | || | | || ||||| |||| || || || Sbjct 1224 GCCGGTAAGCAGTTGGAGGATGGTCGCACCCTCTCTGACTACAATATCCAAAAGGAATCC 1165 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| | || ||| | || || Sbjct 1164 ACCCTTCATTTGGTGTTGCGTCTCCG 1139 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| || || || ||| ||||| || | ||| || ||| Sbjct 2247 ACTGGCAAGACCATCACCTTAGAGGTCGAACCATCTGATACTATTGAAAATGTCAAGGCT 2188 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| || || || ||| || || ||| | || || || ||||| || Sbjct 2187 AAAATTCAAGATAAGGAGGGCATTCCCCCAGATCAACAACGTCTAATTTTTGCCGGTAAA 2128 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||| ||| | |||||| ||||||||||| | || ||||| ||||||||||| Sbjct 2127 CAACTTGAAGACGGACGCACTTTGTCCGATTACAACATTCAAAAAGAATCTACTCTTCAT 2068 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | | ||||| Sbjct 2067 TTGGTTCTACGTCTTCG 2051 >seq177482 Length=2829 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| |||||| || || || || || |||||| | || || ||| || ||| Sbjct 1430 CAGATATTCGTCAAAACCCTGACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCGGAC 1489 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| || |||||| || |||||||||||| || || || Sbjct 1490 ACTATCGAAAATGTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCACCAGATCAGCA 1548 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || || || |||||||| ||||||||||| | || | |||| ||||| | Sbjct 1549 ACGTTTGATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACACTTTCCGACTACAATAT 1608 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || | ||| | || ||| | ||||| Sbjct 1609 TCAAAAAGAATCAACATTGCACTTGGTATTGCGCCTTCG 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178830087976710