Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq64788 125 2e-23
seq177482 95.1 3e-14
>seq64788
Length=4825
Score = 125 bits (138), Expect = 2e-23
Identities = 148/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252
|| || ||||| ||||| |||||||| ||| |||||||| | ||| || |||||
Sbjct 367 ACTGGCAAAACCATCACCTTGGAAGTTGAACCATCTGACACCATTGAAAATGTTAAAGCT 308
Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312
||| ||||| || || ||||| ||| || ||| ||| | | ||||||||||| ||
Sbjct 307 AAA-ATTCAGGATAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATCTTCGCCGGTAA 249
Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372
||||||||||||||| | |||||| |||||||||| | || || ||||| ||||| ||
Sbjct 248 GCAGTTGGAAGATGGCCGTACTTTGTCCGATTACAATATTCAAAAGGAGTCCACTCTCCA 189
Query 206373 CCTTGTTTTGAGACTTCG 206390
| | || ||| | || ||
Sbjct 188 CTTGGTATTGCGTCTCCG 171
Score = 116 bits (128), Expect = 9e-21
Identities = 133/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
||||||||||| || || || ||||| ||| || ||||| | ||| ||||||
Sbjct 1563 ACAGGAAAAACAATTACCTTAGAAGTTGAACCATCCGACACTATTGAAAATGTAAAGGCC 1504
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
|| |||||||| |||||||| ||| || || ||| | | |||||||| || ||
Sbjct 1503 AAAATTCAAGATAAAGAAGGTATTCCCCCAGATCAACAACGTTTAATCTTCGCTGGTAAA 1444
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372
|| |||||||||||| | || ||| ||||||||||| | || || |||||||| |||||
Sbjct 1443 CAATTGGAAGATGGACGTACATTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCA 1385
Score = 100 bits (110), Expect = 7e-16
Identities = 146/201 (73%), Gaps = 8/201 (4%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| | || |||||||| || || || || || ||| || || || | |||
Sbjct 1800 AAAACATTAACGGGAAAAACAATTACATTAGAGGTCGAACCATCGGATACCATAGAAAAT 1741
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300
|| ||||| ||| || ||||| |||||||| ||| || || |||| || || ||
Sbjct 1740 GTTAAAGCTAAA-ATCCAAGACAAAGAAGGTATTCCCCCAGA---TCAACAGCGTTTAAT 1685
Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360
||||| || || || |||||||||||| | || ||| ||||||||||| |||| |||||
Sbjct 1684 TTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAACATCCAAAAAGA 1625
Query 206361 GTCTACTCTTCACCTTGTTTT 206381
||| || |||||| | || ||
Sbjct 1624 GTCGACCCTTCACTTGGTCTT 1604
Score = 87.8 bits (96), Expect = 4e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|||||| | || |||||||| ||||| ||||| || ||| || || || | |||
Sbjct 1344 AAAACGTTGACTGGAAAAACCATCACCTTGGAGGTAGAACCATCAGATACCATTGAAAAT 1285
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| ||||| || ||||| || || ||| ||| | | ||||||
Sbjct 1284 GTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCTCCAGACCAACAACGTTTGATCTTC 1225
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| ||||||||||| ||||| | || | | || ||||| |||| || || ||
Sbjct 1224 GCCGGTAAGCAGTTGGAGGATGGTCGCACCCTCTCTGACTACAATATCCAAAAGGAATCC 1165
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|| ||||| | || ||| | || ||
Sbjct 1164 ACCCTTCATTTGGTGTTGCGTCTCCG 1139
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||| || || || ||| ||||| || | ||| || |||
Sbjct 2247 ACTGGCAAGACCATCACCTTAGAGGTCGAACCATCTGATACTATTGAAAATGTCAAGGCT 2188
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
|| |||||||| || || || ||| || || ||| | || || || ||||| ||
Sbjct 2187 AAAATTCAAGATAAGGAGGGCATTCCCCCAGATCAACAACGTCTAATTTTTGCCGGTAAA 2128
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| | ||||| ||| | |||||| ||||||||||| | || ||||| |||||||||||
Sbjct 2127 CAACTTGAAGACGGACGCACTTTGTCCGATTACAACATTCAAAAAGAATCTACTCTTCAT 2068
Query 206374 CTTGTTTTGAGACTTCG 206390
| ||| | | |||||
Sbjct 2067 TTGGTTCTACGTCTTCG 2051
>seq177482
Length=2829
Score = 95.1 bits (104), Expect = 3e-14
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
|||||||| |||||| || || || || || |||||| | || || ||| || |||
Sbjct 1430 CAGATATTCGTCAAAACCCTGACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCGGAC 1489
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| ||||| || ||||| || |||||| || |||||||||||| || || ||
Sbjct 1490 ACTATCGAAAATGTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCACCAGATCAGCA 1548
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| | | || || || |||||||| ||||||||||| | || | |||| ||||| |
Sbjct 1549 ACGTTTGATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACACTTTCCGACTACAATAT 1608
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| ||||| || || | ||| | || ||| | |||||
Sbjct 1609 TCAAAAAGAATCAACATTGCACTTGGTATTGCGCCTTCG 1647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178830087976710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |