Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq41982 131 1e-25 seq64788 111 1e-19 >seq41982 Length=5201 Score = 131 bits (144), Expect = 1e-25 Identities = 929/1462 (64%), Gaps = 71/1462 (5%) Strand=Plus/Minus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 ||| || ||||| || | ||| || || ||||| || |||| ||| |||||||| ||||| Sbjct 3358 CACAGTAAATTGTATAGCATTTGCTGCTGGTTTTGTCCTCAAATAATACATGCCGGTCTT 3299 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTA---TAGCTCGGATC 136754 ||| || | ||||| ||| ||| || || | ||| |||| ||| | || || Sbjct 3298 TAAGCCTGCTTTCCAGGCATAGAAATGAATTGAGGTCAA---TTTACCGTAGTTGGGTTC 3242 Query 136755 GGCCACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCAT 136814 ||||| | ||| | ||| || || ||||||||| ||| || || || || ||||| Sbjct 3241 AGCCACATGTATATTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCGGCTGCCAT 3182 Query 136815 GTTCAATAGTACTTTTTGCTTAATT-TCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGG 136873 || |||||| | || | || | |||||| | || ||| | || || | || Sbjct 3181 -TTGAATAGTGGTCTTAACGGAAATCTCCCAAACTGTCTTATATAGATCACGAATATCTT 3123 Query 136874 GCGGAATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTTTCATCATGAGAT 136933 ||||||||||| || |||| ||| ||| || || ||| | | | | | Sbjct 3122 TGGGAATTTCATCTATGGCTTGTATAGAGCCGCGATTGGAAATAATTCTGTTTTTCATTT 3063 Query 136934 CAGTCGAGTATACGTT-GCTCTCTATGAGTTTA----TCGACGAGATGCTGATTTACTAC 136988 | ||| || | | | || | | |||| | | | | ||| ||||| || | Sbjct 3062 C-GTC----ATCCCATAGATCACGTTCAGTTAAATCTTTTAGCAAATGATGATTGACAAT 3008 Query 136989 -TTGATATTCGCCCGATAGCAC---TCTGCGTACGTACAGATTACTAGTGAACGGCTCGA 137044 |||| |||| ||||||||||| |||| ||| || | ||| || | ||||| | Sbjct 3007 ATTGA-ATTCTCCCGATAGCACACGTCTG-GTA--TAAATATTGGAGGTATAAGGCTCAA 2952 Query 137045 ACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACA 137104 | ||||| || || ||||| || ||||| || | || || ||||| || | | || Sbjct 2951 ATGATTCATTATTGCCCAAGATTTGTGCGGTAGAGGCAGTGGGCATAGGGGCCAATAGCA 2892 Query 137105 ATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGAT 137164 | ||||| |||| ||| || | || | || | |||| |||||||||||| || Sbjct 2891 AAGAATTTCGTACACCATGCTGTTTGATTTTCTCTTTCAACTCTGTCCAGTTCCACAAAT 2832 Query 137165 TGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTT 137224 | | | | ||| ||||||||| ||| | || | | || |||| | || | Sbjct 2831 CGGTAG---GAGTTTTATTCCACATATCGTATTGTAGTATGCCCTTACTTACCGGGCAGC 2775 Query 137225 CTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGC 137284 | | ||||| ||||| | || || || | || |||| ||| | | ||||| Sbjct 2774 CGGGATAAGTTTCATAAGGACCTAGCTTTTCGGACAATTCACAACTAGCTTCCAATGCGC 2715 Query 137285 CATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGG 137344 |||| |||||||||||| | |||| | ||| || || | || ||| ||||||| Sbjct 2714 CATAATAAATAGTTTCGAAAATTTGTTGATTTAACAAAGCCGCCTTTTCGCTTTCGTAGG 2655 Query 137345 GCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGT 137404 | | | || || | || | || ||||| || || | ||| || || ||||| | | Sbjct 2654 GGAAACGCATTAAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGAT 2595 Query 137405 GTTTAAAATTTGATATT-TGAGCGCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTA 137463 | | ||| ||| | || | | || | ||||||||||| |||||| ||| | Sbjct 2594 GACGTAGATTAGATTTCCTGGCCTCCGGCA-GAGGATAAAAGTTAATGTCTATGATTTTG 2536 Query 137464 TTGAGATTGTTAGTAACGACTCTGG--ACACTTTGTAGAGCAATTC--GAAATCGAAGCT 137519 |||||||| || |||| |||| | | ||| ||| || | ||| || ||||| | Sbjct 2535 TTGAGATTTTTGGTAATGACTTTAGTAACATTTTTTA----ATTTCTTAAAGTCGAATGT 2480 Query 137520 TTT---AGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGC 137576 ||| || | || | |||| |||| | ||| || ||||| || || || ||||| Sbjct 2479 TTTTTCAGGC-----GTCA-CAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGC 2426 Query 137577 CGTTTC-TGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCA 137635 | || | || || || | ||||||||| | || | || ||| | | | Sbjct 2425 TATCTCATCGGGTG-CGGAATACTCTACAATTTCCGTACACAAGTTACTG-CACTTAATA 2368 Query 137636 CTCCCAAATTCTTTTGATTGTTTTTCT--CGTTGAC-GTGATCTTTATATATCATATACG 137692 | |||| | ||||| | ||| ||| || | || | ||| || || | ||| || | Sbjct 2367 GTGCCAA--TATTTTGCTGGTTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGG 2310 Query 137693 GAGTTCCGGTTTCGACTTGAGTCTCAACAATTTTTCTGTGAAGATCCAACGCCATAATTT 137752 |||| || ||||| ||||||| |||| || |||| || ||| | | Sbjct 2309 GAGTACCTGTTTCTACTTGAGCTTCAATTATGGCAAACCAAAGAGCCTGGGCCTTGA-CG 2251 Query 137753 GTTCTCTAAAC-TTGCCTTGAGCTTCAAAACTTTCGTAT--AGCCGTTTAAATTTTTCGC 137809 || | | | ||||||| | |||| | || |||| | || |||| | | Sbjct 2250 GTACGGTTTGCTTTGCCTTCATTTTCATA--CTTGGTATACAATTCTTCGAATTCCGCAC 2193 Query 137810 CCATAACAATCGTTAGACCCGGACACTCGTCGGGACACATCAACGACCATTTTCC-TCCC 137868 || ||| | ||||| ||||| | || ||||||||| |||||||| | ||| | Sbjct 2192 CCCAAACTTCCTGCAGACCAGGACATTTGTGGGGACACATTAACGACCAATCTCCATTTT 2133 Query 137869 GTCCTAACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCC 137928 | || || |||| ||| |||| | || |||| | ||| | | || || | ||| Sbjct 2132 CTTCT-ACTCTTTTCATAAACAAATCGGGTATCCACAGGGCATAGAATAGATCTCTAGCT 2074 Query 137929 TTCATATCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGC 137988 | ||||| ||| |||| |||||||||||||| ||||||||| | |||| Sbjct 2073 CTGTGCTCTTCCTTGCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGC 2014 Query 137989 CAAGGCTCGATATAGACGGCCATAGCTCCTTTTCTTTT---ACCGCCTTGATCCACATGA 138045 |||||||| | ||| | ||| | |||||| | ||| ||||||||||| |||| Sbjct 2013 CAAGGCTCCAAATAAATGGCAAATGCTCCTGGACGTTTGCCGCCGCCTTGATCTACATAG 1954 Query 138046 C--GCAACATACTATTAAAGAC 138065 | ||||||| | ||||| || Sbjct 1953 CGGGCAACAT--TGTTAAACAC 1934 >seq64788 Length=4825 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | || || || |||||||| || || | ||||| | || |||||| || Sbjct 2274 AAAATGCAAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAA-CC 2216 Query 25232 AAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | | |||||||| || | || || |||||| ||||| ||||| || || || || Sbjct 2215 ATCTGATACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCCCCAGA 2156 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| ||| | || |||| | ||| |||||||| ||||| | | | | | |||||| Sbjct 2155 TCAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGATTA 2096 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||| |||||||||||||| || ||||||| || Sbjct 2095 CAACATTCAAAAAGAATCTACTCTTCATTTGGT 2063 Score = 100 bits (110), Expect = 3e-16 Identities = 155/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||||||||| |||||| | || || | || |||||| ||| Sbjct 1816 CATGCAAATATTCGTTAAAACATTAACGGGAAAAACAATTACATTAGAGGTCGAA-CCAT 1758 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | ||||| || || | || ||| ||||| || ||||| ||||| || || |||| Sbjct 1757 CGGATACCATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATC 1698 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTA 25350 | || | | |||| || || |||||| | ||||||| | | |||| |||||| Sbjct 1697 AACAGCGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTC--CGATTA 1640 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 ||| || |||||||| || ||| |||| || || ||| Sbjct 1639 CAACATCCAAAAAGAGTCGACCCTTCACTTGGTCTTA 1603 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||||| || || ||| | ||||| | || || || | | Sbjct 2043 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCTTCC 1984 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| |||||| || || || || || || || ||||| Sbjct 1983 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCAA 1924 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | |||| || ||| |||||| | ||||| | | | |||| | |||||| Sbjct 1923 CAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGGCGCACATTGTCTG--ATTACA 1866 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| ||||||||||| || | ||||| || ||| | ||| | || || Sbjct 1865 ATATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGG 1817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443995517563200