Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq64788 113 4e-20 seq53560 96.9 3e-15 seq125840 87.8 1e-12 seq43813 82.4 6e-11 >seq64788 Length=4825 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| || |||||||||||||| ||||| ||| |||| || || | Sbjct 2043 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCTTCC 1984 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| |||||| ||||| ||||| | || |||||| Sbjct 1983 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCAA 1924 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| || || |||||||| ||||| || || |||||||| Sbjct 1923 CAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 1864 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATT 106471 |||||||||||||||||| | ||||| ||||| Sbjct 1863 ATACAAAAAGAATCTACATTGCATTTGGTATT 1832 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 ||||||||||| || || || ||||| |||||||||||||| ||| | || ||||| Sbjct 2274 AAAATGCAAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAACCA 2215 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| || ||| | || || |||||| || || || ||| | ||| ||| Sbjct 2214 TCTGATACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCCCCAGAT 2155 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||| | || |||| ||| || |||||| | ||||| ||| || ||||||| Sbjct 2154 CAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGATTAC 2095 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGT 106468 ||||| |||||||||||||| || ||||| || Sbjct 2094 AACATTCAAAAAGAATCTACTCTTCATTTGGT 2063 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| ||||| || ||||| || || || |||||| | ||| ||||| | Sbjct 1587 ATGCAGATTTTCGTTAAGACCTTGACAGGAAAAACAATTACCTTAGAAGTTGAACCATCC 1528 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || || |||||| || |||||||| | ||| |||||| Sbjct 1527 GACACTATTGAAAATGTAAAGGCCAAAATTCAAGATAAAGAAGGTATTCCCCCAGATCAA 1468 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | || || |||||||| |||||| || || |||||||||| Sbjct 1467 CAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 1408 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATT 106471 || ||||| || ||||| || ||||| || || Sbjct 1407 ATTCAAAAGGAGTCTACCCTTCATTTGGTCTT 1376 >seq53560 Length=2468 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 99892 ACGTTTAGAAACTTTTGTGGATTGGCCGCTCAGTTTGAAACAAAAACCAGAGCAATTGGC 99951 ||||||| |||| ||||| || ||||| | ||| |||||||||| || | | ||||||| Sbjct 1023 ACGTTTACAAACATTTGTCGACTGGCCACGAAGTATGAAACAAAAGCCTGCGGAATTGGC 964 Query 99952 CGAAGCCGGTTTTTATTACACCGGCAAAGGTGACAAAGTTAAATGTTTTCATTGCGACGG 100011 ||| || ||||| ||||| | || ||||||| || |||||||| || | || Sbjct 963 CGAGGCTGGTTTCTATTATATGGGTGTTGGTGACAGTGTAAAATGTTTCAGCTGTCAGGG 904 Query 100012 CGGCCTCAAAGACTGGGA 100029 ||| || ||||||||||| Sbjct 903 CGGTCTTAAAGACTGGGA 886 >seq125840 Length=3442 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 106254 TTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAA 106313 ||| | ||||| || || || ||||| || ||||| |||||||||||| ||||| || Sbjct 532 TTATAGATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTCGAG 591 Query 106314 CCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTT 106373 || ||| | ||| | || || ||||| ||||||||||| | ||| Sbjct 592 CCTTACGACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCA 651 Query 106374 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGAT 106433 ||||||||| | | || | || || |||||||| |||||| | || || ||| Sbjct 652 GATCAACAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGAC 711 Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGTA 106469 ||||| || ||||| ||||| || ||||||| ||| Sbjct 712 TACAATATCCAAAAGGAATCCACCTTACATTTGGTA 747 >seq43813 Length=3862 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 99892 ACGTTTAGAAACTTTTGTGGATTGGCCGCTCAGTTTGAAACAAAAACCAGAGCAATTGGC 99951 ||||||| |||| |||| || ||||| | ||| |||||||||| |||||| || |||| Sbjct 1301 ACGTTTACAAACATTTGCCGACTGGCCACGAAGTATGAAACAAAAGCCAGAGGAACTGGC 1242 Query 99952 CGAAGCCGGTTTTTATTACACCGGCAAAGGTGACAAAGTTAAATGTTTTCATTGCGACGG 100011 ||| || ||||| ||||| | ||| || |||| || |||||| || || Sbjct 1241 CGAGGCTGGTTTCTATTATAGGGGCGTTGGGGACAGTGTACTATGTTTCAGCTGTTTGGG 1182 Query 100012 CGGCCTCAAAGACTGGGA 100029 || |||||||||||||| Sbjct 1181 TGGTCTCAAAGACTGGGA 1164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401361131046080