Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq91934 228 6e-55 seq148918 100 2e-16 >seq91934 Length=4437 Score = 228 bits (252), Expect = 6e-55 Identities = 421/612 (69%), Gaps = 14/612 (2%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 ||| |||| || |||||||| ||| || || |||||||||||| | ||| || ||| Sbjct 2966 GTTCTGGCCTTCTTTGCTGCTTCCGATGGTATTGTCAATGAAAATCTTGTTGAACGTTTT 3025 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | ||||| || ||| | |||| ||||| ||||| ||||| || ||||||||||| ||| Sbjct 3026 TCCCAAGAGGTACAAGTTACAGAGGCACGCTGTTTCTATGGTTTCCAAATTGCCATGGAA 3085 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 ||| | || || |||||||| ||| || |||| || | ||||| |||||| | ||| Sbjct 3086 AATGTACACTCTGAAATGTATAGTATTTTGATCGACAGCTACATTAAAGAT---CGCGAA 3142 Query 44030 AAGCATCGAT----TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGA 44085 | | |||| | |||||||| || ||||| | || || |||| | || || || Sbjct 3143 CAAC-GCGATTATCTCTTTAATGCCATTGAAACGATGCCAGCTGTTAAGCGCAAGGCCGA 3201 Query 44086 CTGGGCCCTTAAATGGATAAATTCAAA---TGATTCTTTTGGAGAACGACTTGTCGCGTT 44142 ||||| | ||||| ||||| | |||||| ||||| || | || || Sbjct 3202 TTGGGCAATGTCTTGGATTGGCTCAAAATCGGCCAATTTTGGTGAACGCATTATTGCATT 3261 Query 44143 TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAA 44202 ||| | |||||| ||||||||||| || ||||| | ||||||||| ||||||| Sbjct 3262 TGCCGCTGTGGAGGGCATTTTCTTCAGTGGCAGTTTTGCTTCGATATTTTGGCTAAAGAA 3321 Query 44203 ACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTT 44262 ||| ||| | |||||||| | || || || |||||||| || |||||| || || || Sbjct 3322 ACGTGGTCTTATGCCTGGCCTTACATTCTCCAATGAGTTGATTTCTCGTGACGAGGGTTT 3381 Query 44263 ACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAA 44322 |||||| ||||||||| || | || | || || | || | || | || | Sbjct 3382 ACATTGTGATTTTGCTGTGTTAATGTTTAAACATTTA--ATACAACGTCCCAGC-CGTGA 3438 Query 44323 GACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGC 44382 || ||| || || || | || || ||||| || |||||||| || | || ||| Sbjct 3439 GAGAATAACCGAAATAATAACGGAAGCTGTAAAAATTGAACAAGAGTTCTTAACCGAAGC 3498 Query 44383 ATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACAT 44442 || || || ||||| || || |||||| |||||| |||||||||||| | Sbjct 3499 TTTGCCCGTCAATTTGATTGGCATGAATTGTAAATTGATGTCGGAATATATTGAATTTGT 3558 Query 44443 TGCAGATCGttt 44454 || |||||||| Sbjct 3559 AGCTGATCGTTT 3570 >seq148918 Length=2823 Score = 100 bits (110), Expect = 2e-16 Identities = 173/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 19273 ATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGA 19332 ||||| | |||||||||| || || || ||| | |||| | | |||||||||| Sbjct 2226 ATCTTCAGAAGAGCATTTGCATCTCGAGTCTTTCCACCAGAGTTGGTAGAACAATTGGGG 2167 Query 19333 TGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATT 19392 || || || || || |||| | ||||| ||||| ||| ||| ||||| || || Sbjct 2166 TGCAAGCACGTAAAGGGTATTTTATTGTATGGTCCACCCGGTACTGGTAAAACTTTGATG 2107 Query 19393 GCGAGAGAACTTAGTAAATTACTTACAAAACA-ACCTCCCAAAATTGTAAATGGTCCTGA 19451 || | || || |||| | ||| | || | ||||| ||||| |||||||| | Sbjct 2106 GCCCGCCAAATTGGTAATATG-TTAAATGCCAGAGAGCCCAAGATTGTTAATGGTCCACA 2048 Query 19452 AATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGC 19511 ||| || |||||||||| ||| |||| |||| || | |||||||||||||||| || Sbjct 2047 AATTTTGGATAAATATGTGGGTGAATCAGAAGCCAACATCAGACGTTTGTTTGCTGAAGC 1988 Query 19512 TGAAGAAGA 19520 || || || Sbjct 1987 CGAGGAGGA 1979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396499262547550