Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq91934 228 6e-55
seq148918 100 2e-16
>seq91934
Length=4437
Score = 228 bits (252), Expect = 6e-55
Identities = 421/612 (69%), Gaps = 14/612 (2%)
Strand=Plus/Plus
Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909
||| |||| || |||||||| ||| || || |||||||||||| | ||| || |||
Sbjct 2966 GTTCTGGCCTTCTTTGCTGCTTCCGATGGTATTGTCAATGAAAATCTTGTTGAACGTTTT 3025
Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969
| ||||| || ||| | |||| ||||| ||||| ||||| || ||||||||||| |||
Sbjct 3026 TCCCAAGAGGTACAAGTTACAGAGGCACGCTGTTTCTATGGTTTCCAAATTGCCATGGAA 3085
Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029
||| | || || |||||||| ||| || |||| || | ||||| |||||| | |||
Sbjct 3086 AATGTACACTCTGAAATGTATAGTATTTTGATCGACAGCTACATTAAAGAT---CGCGAA 3142
Query 44030 AAGCATCGAT----TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGA 44085
| | |||| | |||||||| || ||||| | || || |||| | || || ||
Sbjct 3143 CAAC-GCGATTATCTCTTTAATGCCATTGAAACGATGCCAGCTGTTAAGCGCAAGGCCGA 3201
Query 44086 CTGGGCCCTTAAATGGATAAATTCAAA---TGATTCTTTTGGAGAACGACTTGTCGCGTT 44142
||||| | ||||| ||||| | |||||| ||||| || | || ||
Sbjct 3202 TTGGGCAATGTCTTGGATTGGCTCAAAATCGGCCAATTTTGGTGAACGCATTATTGCATT 3261
Query 44143 TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAA 44202
||| | |||||| ||||||||||| || ||||| | ||||||||| |||||||
Sbjct 3262 TGCCGCTGTGGAGGGCATTTTCTTCAGTGGCAGTTTTGCTTCGATATTTTGGCTAAAGAA 3321
Query 44203 ACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTT 44262
||| ||| | |||||||| | || || || |||||||| || |||||| || || ||
Sbjct 3322 ACGTGGTCTTATGCCTGGCCTTACATTCTCCAATGAGTTGATTTCTCGTGACGAGGGTTT 3381
Query 44263 ACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAA 44322
|||||| ||||||||| || | || | || || | || | || | || |
Sbjct 3382 ACATTGTGATTTTGCTGTGTTAATGTTTAAACATTTA--ATACAACGTCCCAGC-CGTGA 3438
Query 44323 GACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGC 44382
|| ||| || || || | || || ||||| || |||||||| || | || |||
Sbjct 3439 GAGAATAACCGAAATAATAACGGAAGCTGTAAAAATTGAACAAGAGTTCTTAACCGAAGC 3498
Query 44383 ATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACAT 44442
|| || || ||||| || || |||||| |||||| |||||||||||| |
Sbjct 3499 TTTGCCCGTCAATTTGATTGGCATGAATTGTAAATTGATGTCGGAATATATTGAATTTGT 3558
Query 44443 TGCAGATCGttt 44454
|| ||||||||
Sbjct 3559 AGCTGATCGTTT 3570
>seq148918
Length=2823
Score = 100 bits (110), Expect = 2e-16
Identities = 173/249 (69%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 19273 ATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGA 19332
||||| | |||||||||| || || || ||| | |||| | | ||||||||||
Sbjct 2226 ATCTTCAGAAGAGCATTTGCATCTCGAGTCTTTCCACCAGAGTTGGTAGAACAATTGGGG 2167
Query 19333 TGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATT 19392
|| || || || || |||| | ||||| ||||| ||| ||| ||||| || ||
Sbjct 2166 TGCAAGCACGTAAAGGGTATTTTATTGTATGGTCCACCCGGTACTGGTAAAACTTTGATG 2107
Query 19393 GCGAGAGAACTTAGTAAATTACTTACAAAACA-ACCTCCCAAAATTGTAAATGGTCCTGA 19451
|| | || || |||| | ||| | || | ||||| ||||| |||||||| |
Sbjct 2106 GCCCGCCAAATTGGTAATATG-TTAAATGCCAGAGAGCCCAAGATTGTTAATGGTCCACA 2048
Query 19452 AATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGC 19511
||| || |||||||||| ||| |||| |||| || | |||||||||||||||| ||
Sbjct 2047 AATTTTGGATAAATATGTGGGTGAATCAGAAGCCAACATCAGACGTTTGTTTGCTGAAGC 1988
Query 19512 TGAAGAAGA 19520
|| || ||
Sbjct 1987 CGAGGAGGA 1979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396499262547550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |