Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq41982 120 4e-22
seq195284 96.9 4e-15
seq154177 96.9 4e-15
>seq41982
Length=5201
Score = 120 bits (132), Expect = 4e-22
Identities = 242/355 (68%), Gaps = 13/355 (4%)
Strand=Plus/Minus
Query 111041 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 111100
||||| ||| || || ||||| || ||||| | |||||||| | || || | ||||
Sbjct 2643 AAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGACGTAGATTA 2584
Query 111101 GACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 111160
|| || | || | | |||||||| || |||| |||| | ||| |||||||||
Sbjct 2583 GATTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGATTTTTG 2524
Query 111161 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGA--GTCTCTTCAT 111218
|||| | || || | ||| ||||| || ||||| ||| || | ||||
Sbjct 2523 GTAATGACTTTAGTAA---CAT----TTTTTAATTTCTTAAAGT-CGAATGTTTTTTCAG 2472
Query 111219 ---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTAT 111275
| ||| || | |||||| ||||| |||||||| || || || |||||||
Sbjct 2471 GCGTCACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGGGTG 2412
Query 111276 CTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTT 111335
| | ||||||| |||||| ||||| ||||| | |||||| || || | ||| | |
Sbjct 2411 CGGAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGCT 2352
Query 111336 GGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390
|||||||||| || || ||||||||||| | ||||||||| || || || ||
Sbjct 2351 GGTTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTC 2297
>seq195284
Length=2243
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683
|| || ||||| || ||||| ||||| | |||||| || ||||| ||| || ||| ||
Sbjct 1382 CCAACAGCATCGATTTCATCTATGAACAGAATACAAGGAGCATTTTTGCGTGCCATTGCA 1441
Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743
|| | ||| || || ||| || |||||||||||||||||| |||| ||| | || |
Sbjct 1442 AACATATCACGCACTCTTGAGGGACCCACACCAACAAACATTTCCAAAAACTCTGATCCG 1501
Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803
|| | || || || || || | ||| || ||| ||||| |||||| | || ||
Sbjct 1502 GAAACCGTAATAAAAGGCACGTTAGCTTCTCCTGCGGTGGCTTTGGCGAGTAATGTTTTA 1561
Query 11804 CCCGTACCTGG 11814
||||| || ||
Sbjct 1562 CCCGTGCCAGG 1572
>seq154177
Length=6269
Score = 96.9 bits (106), Expect = 4e-15
Identities = 170/245 (69%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865
|| || |||||| | | ||| ||||| || ||||| | ||||| || | || |||||
Sbjct 2291 TCCTTGCCACCCGTCAAACGAGTACCGAACTGACCTCTAGGCTCTAGCAAATTGATGTTA 2350
Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924
|| ||||| ||| | | |||||| ||||||||||| || || || ||||| |||||
Sbjct 2351 TTAGAACCCACATAATTCTGGGCCAAATTAACGATGGTCATTTGC-AGCGACACCTCACC 2409
Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984
||| |||||||| ||| | || || || | | | | || |||||||| | |||
Sbjct 2410 GTGATGGTAAGCAGACATTTCAGCCACCGAACCAGAAAGTTGGGCCACCTTGACTTCGCG 2469
Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044
|||| ||| | |||||||| |||| || || | || ||||| | ||||||
Sbjct 2470 TTTGTCGTTACGTTTGAAGCAAGTGAACATGACCTTACGTTGACCGGGCTTAAAACCATC 2529
Query 182045 CGCCA 182049
| |||
Sbjct 2530 CACCA 2534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 626481467496000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |