Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq41982 120 4e-22 seq195284 96.9 4e-15 seq154177 96.9 4e-15 >seq41982 Length=5201 Score = 120 bits (132), Expect = 4e-22 Identities = 242/355 (68%), Gaps = 13/355 (4%) Strand=Plus/Minus Query 111041 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 111100 ||||| ||| || || ||||| || ||||| | |||||||| | || || | |||| Sbjct 2643 AAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGACGTAGATTA 2584 Query 111101 GACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 111160 || || | || | | |||||||| || |||| |||| | ||| ||||||||| Sbjct 2583 GATTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGATTTTTG 2524 Query 111161 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGA--GTCTCTTCAT 111218 |||| | || || | ||| ||||| || ||||| ||| || | |||| Sbjct 2523 GTAATGACTTTAGTAA---CAT----TTTTTAATTTCTTAAAGT-CGAATGTTTTTTCAG 2472 Query 111219 ---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTAT 111275 | ||| || | |||||| ||||| |||||||| || || || ||||||| Sbjct 2471 GCGTCACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGGGTG 2412 Query 111276 CTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTT 111335 | | ||||||| |||||| ||||| ||||| | |||||| || || | ||| | | Sbjct 2411 CGGAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGCT 2352 Query 111336 GGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 |||||||||| || || ||||||||||| | ||||||||| || || || || Sbjct 2351 GGTTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTC 2297 >seq195284 Length=2243 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || || ||||| || ||||| ||||| | |||||| || ||||| ||| || ||| || Sbjct 1382 CCAACAGCATCGATTTCATCTATGAACAGAATACAAGGAGCATTTTTGCGTGCCATTGCA 1441 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | ||| || || ||| || |||||||||||||||||| |||| ||| | || | Sbjct 1442 AACATATCACGCACTCTTGAGGGACCCACACCAACAAACATTTCCAAAAACTCTGATCCG 1501 Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 || | || || || || || | ||| || ||| ||||| |||||| | || || Sbjct 1502 GAAACCGTAATAAAAGGCACGTTAGCTTCTCCTGCGGTGGCTTTGGCGAGTAATGTTTTA 1561 Query 11804 CCCGTACCTGG 11814 ||||| || || Sbjct 1562 CCCGTGCCAGG 1572 >seq154177 Length=6269 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 || || |||||| | | ||| ||||| || ||||| | ||||| || | || ||||| Sbjct 2291 TCCTTGCCACCCGTCAAACGAGTACCGAACTGACCTCTAGGCTCTAGCAAATTGATGTTA 2350 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 || ||||| ||| | | |||||| ||||||||||| || || || ||||| ||||| Sbjct 2351 TTAGAACCCACATAATTCTGGGCCAAATTAACGATGGTCATTTGC-AGCGACACCTCACC 2409 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 ||| |||||||| ||| | || || || | | | | || |||||||| | ||| Sbjct 2410 GTGATGGTAAGCAGACATTTCAGCCACCGAACCAGAAAGTTGGGCCACCTTGACTTCGCG 2469 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 |||| ||| | |||||||| |||| || || | || ||||| | |||||| Sbjct 2470 TTTGTCGTTACGTTTGAAGCAAGTGAACATGACCTTACGTTGACCGGGCTTAAAACCATC 2529 Query 182045 CGCCA 182049 | ||| Sbjct 2530 CACCA 2534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626481467496000