Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq41982 102 1e-16 seq154177 89.7 6e-13 >seq41982 Length=5201 Score = 102 bits (112), Expect = 1e-16 Identities = 239/356 (67%), Gaps = 15/356 (4%) Strand=Plus/Minus Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574 ||||| ||| || || ||||| || ||||| | |||||| || ||||| | | |||| Sbjct 2643 AAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGACGTAGATTA 2584 Query 118575 GACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 118634 || |||| || | || |||||||| || | || || | | || ||||||||| Sbjct 2583 GATTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGATTTTTG 2524 Query 118635 GTGACAACCTTTGTGAT-TTCATGAAGCTTTTCGTAATCAAAACTGCGA--GTCTCTTCA 118691 || | || || || | || | || |||| ||| | | ||| || | |||| Sbjct 2523 GTAATGACTTTAGTAACATTTTTTAA---TTTCTTAA-----AGT-CGAATGTTTTTTCA 2473 Query 118692 T---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 | ||| || || |||||| ||||| |||| ||||||||| | ||||||| Sbjct 2472 GGCGTCACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGGGT 2413 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 | | ||||||| ||||||||| |||||||| | |||||| ||||| | || | Sbjct 2412 GCGGAATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGC 2353 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 || || ||| ||||| ||||||||||| | |||||| || || || || || Sbjct 2352 TGGTTACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTC 2297 >seq154177 Length=6269 Score = 89.7 bits (98), Expect = 6e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123 ||| ||||||||| | | ||| || || || ||||| | ||||| || | |||||| || Sbjct 2290 ATCCTTGCCACCCGTCAAACGAGTACCGAACTGACCTCTAGGCTCTAGCAAATTGATGTT 2349 Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182 || ||||||| || | | |||||| || || || || || || || || || |||| Sbjct 2350 ATTAGAACCCACATAATTCTGGGCCAAATTAACGATGGTCATTTGC-AGCGACACCTCAC 2408 Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCAC 179210 ||||||||||||| ||| | || ||||| Sbjct 2409 CGTGATGGTAAGCAGACATTTCAGCCAC 2436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616908360795600