Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq91934 105 7e-18 seq154177 95.1 1e-14 >seq91934 Length=4437 Score = 105 bits (116), Expect = 7e-18 Identities = 298/449 (66%), Gaps = 13/449 (3%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||| ||||| || || | ||||||||||||||| ||||| ||||| | |||||| || Sbjct 3363 ATCAACTCATTGGAGAATGTAAGGCCAGGCATAAGACCACGTTTCTTTAGCCAAAATATC 3304 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | | || ||||||||||| ||||| || ||| ||||| || | || ||||| Sbjct 3303 GAAGCAAAACTGCCACTGAAGAAAATGCCCTCCACAGCGGCAAATGCAATAATGCGTTCA 3244 Query 74904 GCGAA--CGGTGCATCGGAAGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACC 74960 | || || || || | ||||||| | ||||| || || || || || || Sbjct 3243 CCAAAATTGGCCGATTTTGAGCCAATCCAAGACATTGCCCAATCGGCCTTGCGCTTAACA 3184 Query 74961 GCAGGGACAGTATCGATCGCTTGGAAGAG--GCTTGCCTTCTCTTCGGGATCCTTGACG- 75017 || || | || || || || | ||||| | || | | |||| |||| || | | Sbjct 3183 GCTGGCATCGTTTCAATGGCATTAAAGAGATAATCGCGT--TGTTCGCGATCTTTAATGT 3126 Query 75018 AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTAC 75077 ||| |||| |||| || ||| | || || || | || || ||| | Sbjct 3125 AGC-TGTCGATCAAAATACTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAA 3067 Query 75078 GCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAA--TTCATGTCGATAT 75135 | |||||| | || ||||||| || ||||| || | |||||| |||| | | || Sbjct 3066 CCATAGAAACAGCGTGCCTCTGTAACTTGTACCTCTTGGGAAAAACGTTCA--ACAAGAT 3009 Query 75136 TCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGC 75195 | || |||| || || || || || || || || ||||| || | |||||||| | Sbjct 3008 TTTCATTGACAATACCATCGGAAGCAGCAAAGAAGGCCAGAACATGTGAGATAAAGTAAC 2949 Query 75196 GCTCATCGTCAGTGAGTTTGTCCCAATCC 75224 |||||| ||| |||||||| ||||| ||| Sbjct 2948 GCTCATTGTCGGTGAGTTTTTCCCAGTCC 2920 >seq154177 Length=6269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 187/277 (68%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| ||||||| ||| || |||||||||||| | | ||| |||||||| || Sbjct 2263 AGTGAAAATATAACGAGCGCTAGCGCAATCCTTGCCACCCGTCAAACGAGTACCGAACTG 2322 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || || ||||| | | || | ||| || | |||||| | || || ||||| || || Sbjct 2323 ACCTCTAGGCTCTAGCAAATTGATGTTATTAGAACCCACATAATTCTGGGCCAAATTAAC 2382 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 || || ||| || | ||||||| || || || || | | || ||||| | || Sbjct 2383 GATGGTCATTTGCAGCGACACCTCACCGTGATGGTAAGCAGACATTTCAGCCACCGAACC 2442 Query 117484 CGCCAGCTGAGCCAC-----CTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAA 117538 | || || ||||| |||| || || ||| | || |||| ||| | | Sbjct 2443 AGAAAGTTGGGCCACCTTGACTTCGCGTTTGTCGTTACGT-----TTGAAGCAAGTGAAC 2497 Query 117539 ATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCA 117575 || ||||| || |||| ||||| | ||||||| ||| Sbjct 2498 ATGACCTTACGTTGACCGGGCTTAAAACCATCCACCA 2534 Score = 91.5 bits (100), Expect = 2e-13 Identities = 209/313 (67%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || ||||| || |||| ||||| || | ||| |||| || | | Sbjct 2111 CCAGTACCAATACCATCGGCACCATTAACCAATATCATGGGTATAAT--GGGCATATACC 2168 Query 151936 --TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | || || | || || || ||||| | | |||| || | | || |||| | Sbjct 2169 ATTGAGGTTCGATCTTCTGGCCATCATCGACTTCATATTGCAGCAGAGGATCGTCATGGG 2228 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 ||| ||||||| | |||| || || || | ||||| || || || | ||| || Sbjct 2229 GATGGAATATCAGACGAGCCAGTGGCGACATAATAGTGAAAATATAACGAGCGCTAGCGC 2288 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 |||||||||||| | || || || || ||||| || ||||| || | |||| || Sbjct 2289 AATCCTTGCCACCCGTCAAACGAGTACCGAACTGACCTCTAGGCTCTAGCAAATTGATGT 2348 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 | || | ||||| ||||||| |||||||| || || || ||||| | | |||| Sbjct 2349 TATTAGAACCCACATAATTCTGGGCCAAATTAACGATGGTCATTTGCAGCGACACCTCAC 2408 Query 152174 CGTGGTGATACGC 152186 |||| || || || Sbjct 2409 CGTGATGGTAAGC 2421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545864992098000