Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq64788 118 7e-22
seq125840 107 1e-18
>seq64788
Length=4825
Score = 118 bits (130), Expect = 7e-22
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||| ||||| ||||||||| |||||||||||| || ||||| || | || ||
Sbjct 174 AGACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGG 233
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| | || |||||||| || || ||||| || ||||| || || | || |||
Sbjct 234 CCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCC 293
Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| || ||| ||| | |||||| | ||| ||||| || ||||||| |||
Sbjct 294 TTATC-CTGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGT 352
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| || || || || || || |||||||||||
Sbjct 353 GATGGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391
Score = 116 bits (128), Expect = 2e-21
Identities = 159/220 (72%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||||||||||||| || ||| |||||||| || || || || || || || ||
Sbjct 1142 AGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGA 1201
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | || |||||||| || || ||||| |||||||| || || | || |||
Sbjct 1202 CCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCC 1261
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT--TCGCTCTCCACTTCCACGG 34666
|| ||| |||||| || | | ||| || ||| | | ||| || |||| ||
Sbjct 1262 TTATCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGTTCT--ACCTCCAAGG 1319
Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || ||||| || || ||||||||||| |||||||||||
Sbjct 1320 TGATGGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359
Score = 113 bits (124), Expect = 3e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | |||||||| ||||| || ||||||||||| ||||| ||
Sbjct 2045 CCACCACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGAC 2104
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || ||||||||||||||||||||||||| |||| ||| ||||| || || ||
Sbjct 2105 AAAGTGCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGA 2164
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||| ||| ||| ||| | || || | ||| || || || ||
Sbjct 2165 ATGCCCTCCTTATCT-TGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGAC 2223
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| | ||| || || || || ||||| || ||||| || || ||||| ||
Sbjct 2224 CTCTAAGGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATTTT 2274
Score = 109 bits (120), Expect = 3e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| || |||||||| || || ||||||||||||||| ||||| || | ||| ||
Sbjct 1370 AGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGT 1429
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| | ||||||||| || || |||||||| ||||| || || || | || ||
Sbjct 1430 CCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCT 1489
Query 34609 TTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| ||| ||| ||| | |||| | ||| ||||| || ||||| | |||
Sbjct 1490 TTATCT-TGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGT 1548
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| || || || || || || |||||||||||
Sbjct 1549 AATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587
Score = 109 bits (120), Expect = 3e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550
||| || |||||||| | || || ||||| || || ||||| || | ||| ||| |
Sbjct 1828 ACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCC 1887
Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610
|||||| | |||||||||||| || || ||||| ||||| || || || | ||| |||||
Sbjct 1888 GTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTT 1947
Query 34611 GTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669
|||| ||| ||| | |||||| | ||| || || ||| || |||| ||| |
Sbjct 1948 GTCT-TGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGA 2006
Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| ||||| || || || || || ||||| || |||||
Sbjct 2007 TGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043
Score = 100 bits (110), Expect = 2e-16
Identities = 157/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| || ||||| || || || ||| ||||| ||||| ||||| || | ||| ||
Sbjct 1598 AGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGT 1657
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| | ||||||||| || || |||||||||||||| || || || | || ||
Sbjct 1658 CCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCT 1717
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCACTTCCACGG 34666
|||||| ||| ||| | |||||| || | || | || | || || || | |
Sbjct 1718 TTGTCTTGGAT-TTTAGCTTTAAC-ATTTTCTATGGTATCCGATGGTTCGACCTCTAATG 1775
Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
| || ||||| || ||||| ||||| || || || ||||||
Sbjct 1776 TAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCATG 1816
Score = 89.7 bits (98), Expect = 3e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||||||||||||| || ||| |||||||| || || || || || || || ||
Sbjct 867 AGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGA 926
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | || |||||||| || || ||||| |||||||| || || | || |||
Sbjct 927 CCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCC 986
Query 34609 TTGTCTGTGATCTT 34622
|| ||| ||||||
Sbjct 987 TTATCTTGGATCTT 1000
>seq125840
Length=3442
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | |||||||| | ||| |||||||| || || || || ||
Sbjct 764 CCACCACGAAGACGGAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGAC 705
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| | |||||||||||| || || ||||| ||||| || || ||
Sbjct 704 AAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 645
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658
| || || |||||| ||| ||| | || || | ||| ||||| | ||| ||
Sbjct 644 ATACCTTCTTTGTCTTGGAT-TTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGAC 586
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| ||| || || ||||| ||||| ||||| || || ||||||||
Sbjct 585 TTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 313971997659830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |