Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq64788 114 9e-21
seq125840 102 6e-17
seq177482 98.7 7e-16
>seq64788
Length=4825
Score = 114 bits (126), Expect = 9e-21
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| || || ||||| | || || ||| |||||| | || |||||| || |
Sbjct 1815 ATGCAAATATTCGTTAAAACATTAACGGGAAAAACAATTACATTAGAGGTCGAAC-CATC 1757
Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| || || | ||| || ||| ||||| |||||||||||| |||| ||
Sbjct 1756 GGATACCATAGAAAAT--GTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGAT 1699
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| || || |||||||| || || ||||||||||| || | ||| | ||||||||||||
Sbjct 1698 CAACAGCGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTAC 1639
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||||||| || | || ||||| || ||| | || || ||
Sbjct 1638 AACATCCAAAAAGAGTCGACCCTTCACTTGGTCTTACGTCTCCGCGGTGG 1589
Score = 109 bits (120), Expect = 4e-19
Identities = 105/135 (78%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| ||||| | || || || ||||| || ||||| ||||| |||||||||||
Sbjct 1950 GACAAGGAAGGAATCCCTCCAGATCAACAACGTTTGATTTTCGCCGGTAAACAATTGGAA 1891
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| |||| ||||| |||||||| || |||||||| || ||||||||||| ||
Sbjct 1890 GACGGGCGCACATTGTCTGATTACAATATACAAAAAGAATCTACATTGCATTTGGTATTA 1831
Query 28003 CGTTTGCGTGGCGGC 28017
||||||||||| |||
Sbjct 1830 CGTTTGCGTGGTGGC 1816
Score = 102 bits (112), Expect = 6e-17
Identities = 163/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
||||||||||| || ||||| || | ||||| || || || | || ||||||
Sbjct 2274 AAAATGCAAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAACCA 2215
Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| || | || | ||| ||||| ||||| || || || || |||| |
Sbjct 2214 TCTGATACTATTGAAAAT--GTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCCCCAG 2157
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| || ||||| ||||||||||||| |||||| | || |||| ||||| ||||||||||
Sbjct 2156 ATCAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGATT 2097
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| |||||||| ||| | ||||||||| | ||| | ||||| ||
Sbjct 2096 ACAACATTCAAAAAGAATCTACTCTTCATTTGGTTCTACGTCTTCGTGGTGG 2045
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| ||||||||| |||| || || ||||| ||||| || || || |||||||||||
Sbjct 1494 GATAAAGAAGGTATTCCCCCAGATCAACAACGTTTAATCTTCGCTGGTAAACAATTGGAA 1435
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | ||| | ||||||||||||||||| ||||| ||| || | |||||||| ||
Sbjct 1434 GATGGACGTACATTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCATTTGGTCTTA 1375
Query 28003 CGTTTGCGTGGCGG 28016
||| | || || ||
Sbjct 1374 CGTCTCCGCGGTGG 1361
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| || |||||| |||| || |||||||| || || || ||||| || || |||||
Sbjct 298 GATAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATCTTCGCCGGTAAGCAGTTGGAA 239
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | || | |||||||||||||| || ||||| ||| |||| | || ||||| |||
Sbjct 238 GATGGCCGTACTTTGTCCGATTACAATATTCAAAAGGAGTCCACTCTCCACTTGGTATTG 179
Query 28003 CGTTTGCGTGGCGGC 28017
||| | ||||| |||
Sbjct 178 CGTCTCCGTGGTGGC 164
>seq125840
Length=3442
Score = 102 bits (112), Expect = 6e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||||||| |||| || || ||||| || || || ||||| |||||||||||
Sbjct 631 GACAAAGAAGGTATTCCCCCAGATCAACAACGTTTGATCTTCGCCGGTAAACAATTGGAA 690
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | |||| ||||||||| ||||| |||||||| || ||| || |||||||| |
Sbjct 691 GATGGTCGCACCTTGTCCGACTACAATATCCAAAAGGAATCCACCTTACATTTGGTACTC 750
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||| ||
Sbjct 751 CGTCTTCGTGGTGG 764
>seq177482
Length=2829
Score = 98.7 bits (108), Expect = 7e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || || ||||| || || || || || || |||| |||||| | |
Sbjct 1427 ATGCAGATATTCGTCAAAACCCTGACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCG 1486
Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909
||| | | || |||||| || || ||||||||||| |||| || |||
Sbjct 1487 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 1546
Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969
||||| || |||||||| ||||| |||||||| || | |||| | ||||| |||||
Sbjct 1547 CAACGTTTGATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACACTTTCCGACTACAAT 1606
Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| |||||||| || ||||| ||||| ||||| | ||||| ||
Sbjct 1607 ATTCAAAAAGAATCAACATTGCACTTGGTATTGCGCCTTCGTGGTGG 1653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355005784711770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |