Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq64788 114 9e-21 seq125840 102 6e-17 seq177482 98.7 7e-16 >seq64788 Length=4825 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| | || || ||| |||||| | || |||||| || | Sbjct 1815 ATGCAAATATTCGTTAAAACATTAACGGGAAAAACAATTACATTAGAGGTCGAAC-CATC 1757 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || ||| ||||| |||||||||||| |||| || Sbjct 1756 GGATACCATAGAAAAT--GTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGAT 1699 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || |||||||| || || ||||||||||| || | ||| | |||||||||||| Sbjct 1698 CAACAGCGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTAC 1639 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||||| || | || ||||| || ||| | || || || Sbjct 1638 AACATCCAAAAAGAGTCGACCCTTCACTTGGTCTTACGTCTCCGCGGTGG 1589 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || || ||||| || ||||| ||||| ||||||||||| Sbjct 1950 GACAAGGAAGGAATCCCTCCAGATCAACAACGTTTGATTTTCGCCGGTAAACAATTGGAA 1891 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| |||| ||||| |||||||| || |||||||| || ||||||||||| || Sbjct 1890 GACGGGCGCACATTGTCTGATTACAATATACAAAAAGAATCTACATTGCATTTGGTATTA 1831 Query 28003 CGTTTGCGTGGCGGC 28017 ||||||||||| ||| Sbjct 1830 CGTTTGCGTGGTGGC 1816 Score = 102 bits (112), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| || ||||| || | ||||| || || || | || |||||| Sbjct 2274 AAAATGCAAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAACCA 2215 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || | || | ||| ||||| ||||| || || || || |||| | Sbjct 2214 TCTGATACTATTGAAAAT--GTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCCCCAG 2157 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| ||||||||||||| |||||| | || |||| ||||| |||||||||| Sbjct 2156 ATCAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGATT 2097 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||||| ||| | ||||||||| | ||| | ||||| || Sbjct 2096 ACAACATTCAAAAAGAATCTACTCTTCATTTGGTTCTACGTCTTCGTGGTGG 2045 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || ||||||||| |||| || || ||||| ||||| || || || ||||||||||| Sbjct 1494 GATAAAGAAGGTATTCCCCCAGATCAACAACGTTTAATCTTCGCTGGTAAACAATTGGAA 1435 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | ||||||||||||||||| ||||| ||| || | |||||||| || Sbjct 1434 GATGGACGTACATTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCATTTGGTCTTA 1375 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 1374 CGTCTCCGCGGTGG 1361 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| |||| || |||||||| || || || ||||| || || ||||| Sbjct 298 GATAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATCTTCGCCGGTAAGCAGTTGGAA 239 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||||||||||||| || ||||| ||| |||| | || ||||| ||| Sbjct 238 GATGGCCGTACTTTGTCCGATTACAATATTCAAAAGGAGTCCACTCTCCACTTGGTATTG 179 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 178 CGTCTCCGTGGTGGC 164 >seq125840 Length=3442 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || ||||| || || || ||||| ||||||||||| Sbjct 631 GACAAAGAAGGTATTCCCCCAGATCAACAACGTTTGATCTTCGCCGGTAAACAATTGGAA 690 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||||||| ||||| |||||||| || ||| || |||||||| | Sbjct 691 GATGGTCGCACCTTGTCCGACTACAATATCCAAAAGGAATCCACCTTACATTTGGTACTC 750 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 751 CGTCTTCGTGGTGG 764 >seq177482 Length=2829 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| || || || || || || |||| |||||| | | Sbjct 1427 ATGCAGATATTCGTCAAAACCCTGACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCG 1486 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || |||||| || || ||||||||||| |||| || ||| Sbjct 1487 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 1546 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || |||||||| ||||| |||||||| || | |||| | ||||| ||||| Sbjct 1547 CAACGTTTGATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACACTTTCCGACTACAAT 1606 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| || ||||| ||||| ||||| | ||||| || Sbjct 1607 ATTCAAAAAGAATCAACATTGCACTTGGTATTGCGCCTTCGTGGTGG 1653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355005784711770