Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq64788 138 3e-27 >seq64788 Length=4825 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| ||||||||||| ||||| || || ||||| | | || | |||||||||| ||| Sbjct 188 GTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCCATCTTCCAACTG 247 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | ||||| ||||| || |||| |||||||| ||||| || || Sbjct 248 CTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGAATTTT 307 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| ||||||||||| |||||| || | ||||| || || || || Sbjct 308 AGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGTGATGGTTTTGCCAGT 367 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | |||||| Sbjct 368 CAAGGTCTTAACGAAAATCTGCAT 391 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| ||||| || |||||||| || || || | ||||| | ||||| |||| |||| Sbjct 1157 TGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACCATCCTCCAACTGC 1216 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | ||||||||||| ||||| | |||||||| || |||||||| Sbjct 1217 TTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGGATCTTA 1276 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| ||||| || || ||| ||||| | ||||| || ||||| || Sbjct 1277 GCCTTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTGATGGTTTTTCCAGTC 1336 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | || || || || | |||||| Sbjct 1337 AACGTTTTCACGAAAATCTGCAT 1359 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | || ||| | |||||| || ||||||||||||||||| ||||| | | || Sbjct 1595 CGGAGACGTAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTA 1654 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||| || || || ||||| || | || ||||| || || |||| ||| Sbjct 1655 CGTCCATCTTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCT 1714 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| ||||| || ||| || ||||| ||||| || || ||| ||||| | Sbjct 1715 TCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAAT 1774 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| | || || || || | ||||| Sbjct 1775 GTAATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 111 bits (122), Expect = 4e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | || ||| | ||||| || ||||| ||||| ||||| ||||| | | || Sbjct 1367 CGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTA 1426 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||| || || || |||||||| | |||||||| || || |||| ||| Sbjct 1427 CGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCT 1486 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || || || || || ||||| || ||||| || |||||| || | Sbjct 1487 TCTTTATCTTGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAG 1546 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| || | ||||| || || | |||||| Sbjct 1547 GTAATTGTTTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| ||||| || |||||||| || || || | ||||| | ||||| |||| |||| Sbjct 882 TGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACCATCCTCCAACTGC 941 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || |||||||| | ||||||||||| ||||| | |||||||| || |||||||| Sbjct 942 TTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGGATCTT 1000 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||| || || ||||| | | || | || ||||||| || || || Sbjct 1847 GTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTACCG 1906 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | |||||||| || ||||| | |||||||||||| || || || ||| Sbjct 1907 GCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTA 1966 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| || || || || |||||||| | ||||| || || || || | ||| Sbjct 1967 ACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAATGTC 2026 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 2027 TTGACAAAGATTTGCAT 2043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156218653571150