Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq64788 161 2e-34
seq125840 140 8e-28
seq177482 125 2e-23
seq134091 102 2e-16
seq68484 87.8 4e-12
>seq64788
Length=4825
Score = 161 bits (178), Expect = 2e-34
Identities = 171/223 (77%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | || || | |||||||||||| || ||||| | ||||||||||| ||||||
Sbjct 170 ACGGAGACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGT 229
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | |||||| || |||||||| | ||||| ||||| || ||||||||
Sbjct 230 ACGGCCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACC 289
Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
|||||| || || || ||| || || ||| ||| |||||||| || | ||| || || |
Sbjct 290 TTCCTTATCCTGAAT-TTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCA 348
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| ||||| || ||||| ||||| || || | ||| | |||||
Sbjct 349 AGGTGATGGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| || |||||||| ||||||| |||||| || | | || | ||||| || | ||||
Sbjct 1157 TGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACCATCCTCCAACTGC 1216
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || |||||||| | ||||||||||| || || ||||||||||| |||||||||||
Sbjct 1217 TTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGGATCTTA 1276
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||| ||| ||| ||||| ||||| | ||| || || || ||||| || || || |||
Sbjct 1277 GCCTTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTGATGGTTTTTCCAGTC 1336
Query 225691 AAAGTTTTTATGAACACTTGCAT 225713
|| ||||| | ||| | |||||
Sbjct 1337 AACGTTTTCACGAAAATCTGCAT 1359
Score = 145 bits (160), Expect = 2e-29
Identities = 167/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | || ||||| ||||||||||| | |||||||||| ||||||
Sbjct 2050 ACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGT 2109
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || ||||| || || || || || || || || |||||||| || || ||||| ||
Sbjct 2110 GCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCC 2169
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| ||||| || || ||| ||| ||| || || || || | ||| || |||||
Sbjct 2170 CTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAA 2229
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| |||||||| || || || || | ||| | |||||||||
Sbjct 2230 GGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATTTT 2274
Score = 143 bits (158), Expect = 6e-29
Identities = 160/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563
||| | ||| || || || |||||||||| |||||||||| ||| || | ||||||||
Sbjct 1606 GACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCTTC 1665
Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623
| || || |||||||| || | || ||||| || || ||||||||||| ||||||||
Sbjct 1666 CAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTG 1725
Query 225624 GATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCT 225682
||| ||| || || ||| ||| ||||| || || | ||| || ||||| || || || |
Sbjct 1726 GAT-TTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGTTT 1784
Query 225683 TGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| ||||| || ||||| | ||| | ||||||
Sbjct 1785 TTCCCGTTAATGTTTTAACGAATATTTGCAT 1815
Score = 123 bits (136), Expect = 6e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| || || || || ||||| | |||||||||| ||| || | |||||||| | ||
Sbjct 1385 TGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGTCCATCTTCCAATTGT 1444
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| ||||||||||| | |||||||| || || ||||||||||| || ||||| || ||
Sbjct 1445 TTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTATCTTGAATTTTG 1504
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||| ||| ||| || ||||| || | ||| || ||||| || || || || || |||
Sbjct 1505 GCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAATTGTTTTTCCTGTC 1564
Query 225691 AAAGTTTTTATGAACACTTGCAT 225713
|| || || | ||| | |||||
Sbjct 1565 AAGGTCTTAACGAAAATCTGCAT 1587
Score = 116 bits (128), Expect = 9e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|| ||||||||||| | ||||||||| | ||| || | ||| ||||| | || || ||
Sbjct 1847 GTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTACCG 1906
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635
||||| || | |||||||| || || || || |||||||||||||| || ||| || ||
Sbjct 1907 GCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTGAAT-TTTAGCTTT 1965
Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695
||| ||| || || || || | || || || || ||||| || ||||| ||||| ||
Sbjct 1966 AACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAATGT 2025
Query 225696 TTTTATGAACACTTGCAT 225713
|| | || | ||||||
Sbjct 2026 CTTGACAAAGATTTGCAT 2043
Score = 109 bits (120), Expect = 1e-18
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|||||||| | |||||| |||||||| || | ||||| || || || ||||| ||||||
Sbjct 6 CCATCTTCCAACTGCTTACCAGCGAAAATCAAACGTTGCTGATCCGGGGGAATGCCTTCC 65
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
|| || ||||| || ||| || ||| ||||| || || | || || || || |||
Sbjct 66 TTATCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGCTCTACTTCCAATGTG 125
Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||| ||||||||||| | ||| | ||||||
Sbjct 126 ATAGTTTTGCCAGTCAAAGTTTTAACGAAGATTTGCAT 163
Score = 102 bits (112), Expect = 2e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| || |||||||| ||||||| |||||| || | | || | ||||| || | ||||
Sbjct 882 TGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACCATCCTCCAACTGC 941
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629
|| || |||||||| | ||||||||||| || || ||||||||||| |||||||||||
Sbjct 942 TTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGGATCTT 1000
>seq125840
Length=3442
Score = 140 bits (154), Expect = 8e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|||||||| ||||||| |||||| |||| ||| || | |||||||| | || || ||
Sbjct 734 GTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCG 675
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|||||||| | |||||||| || || ||||||||||| ||||||||||| || |||
Sbjct 674 GCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTTG 615
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
||| ||| |||||||| | | || || || || || || ||||| || || ||||||
Sbjct 614 ACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGTT 555
Query 225697 TTTATGAACACTTGCAT 225713
|| | ||| | |||||
Sbjct 554 TTGACGAAGATCTGCAT 538
>seq177482
Length=2829
Score = 125 bits (138), Expect = 2e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| | || ||||||||||| | |||||| |||| | ||
Sbjct 1648 ACGAAGGCGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGT 1589
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | ||||| ||||| || || | ||||| || || || ||||| ||
Sbjct 1588 GCGACCATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCC 1529
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| ||||| || ||||| || ||| |||||| ||||| |||| ||| || || |
Sbjct 1528 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAG 1469
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| ||||||| ||||| | ||| | |||||
Sbjct 1468 AGTGATGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCAT 1427
>seq134091
Length=1613
Score = 102 bits (112), Expect = 2e-16
Identities = 82/99 (83%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||||||||||||||||||||| ||||||||||| || | ||| || || ||||| ||||
Sbjct 672 TTCAGGATGACCAAAAAATCAAAATAAATGTTGGTACAAGATTGGGTCTCCTCCTCCTGC 613
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
||||||||| || ||||||| ||||| ||| |||||
Sbjct 612 TGGATCAAAGAATGATGTATTAAGATTTCGATCTGTTAA 574
Score = 91.5 bits (100), Expect = 4e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 371401 ATATTAAATATCGTAGTAATAAAGTTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGA 371460
||||||| | ||||||||||| |||| ||| |||| || ||||| || ||||| |
Sbjct 458 ATATTAATAACTGTAGTAATAAAATTTACAGCTCCTAAAATTGAAGAAATTCCTGCTAAG 399
Query 371461 TGTAAACTAAATATTGCTAAATCGACGGAACCGCCGGAGTGAGCTACAATAGAACTTAAC 371520
|||||| ||| || |||| ||| || ||| | || ||||| | | ||||| |||
Sbjct 398 TGTAAAGAAAAAATAGCTAGATCAACAGAAGCTCCTCCATGAGCGATATTAGAAGATAAA 339
Query 371521 GGCGGGTAAACTGTTCAGCCGGTTC 371545
|| |||||||| ||||| || ||||
Sbjct 338 GGTGGGTAAACAGTTCATCCTGTTC 314
>seq68484
Length=3096
Score = 87.8 bits (96), Expect = 4e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 371413 GTAGTAATAAAGTTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAAT 371472
||||||||||| |||| ||| |||| || ||||| || ||||| | |||||| |||
Sbjct 2805 GTAGTAATAAAATTTACAGCTCCTAAAATTGAAGAAATTCCTGCTAAGTGTAAAGAAAAA 2864
Query 371473 ATTGCTAAATCGACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACT 371532
|| |||| ||| || ||| | || ||||| | | ||||| ||| || ||||||||
Sbjct 2865 ATAGCTAGATCAACAGAAGCTCCTCCATGAGCGATATTAGAAGATAAAGGTGGGTAAACA 2924
Query 371533 GTTCAGCCGGTTC 371545
||||| || ||||
Sbjct 2925 GTTCATCCTGTTC 2937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1189513384271940
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |