Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq64788 161 2e-34 seq125840 140 8e-28 seq177482 125 2e-23 seq134091 102 2e-16 seq68484 87.8 4e-12 >seq64788 Length=4825 Score = 161 bits (178), Expect = 2e-34 Identities = 171/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | |||||||||||| || ||||| | ||||||||||| |||||| Sbjct 170 ACGGAGACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGT 229 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| || |||||||| | ||||| ||||| || |||||||| Sbjct 230 ACGGCCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACC 289 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||| || || || ||| || || ||| ||| |||||||| || | ||| || || | Sbjct 290 TTCCTTATCCTGAAT-TTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCA 348 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || ||||| ||||| || || | ||| | ||||| Sbjct 349 AGGTGATGGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||||||| ||||||| |||||| || | | || | ||||| || | |||| Sbjct 1157 TGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACCATCCTCCAACTGC 1216 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | ||||||||||| || || ||||||||||| ||||||||||| Sbjct 1217 TTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGGATCTTA 1276 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||| ||||| ||||| | ||| || || || ||||| || || || ||| Sbjct 1277 GCCTTGACATTTTCAATGGTATCTGATGGTTCTACCTCCAAGGTGATGGTTTTTCCAGTC 1336 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||| | ||||| Sbjct 1337 AACGTTTTCACGAAAATCTGCAT 1359 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || ||||| ||||||||||| | |||||||||| |||||| Sbjct 2050 ACGAAGACGTAGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGT 2109 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || || || || || || || || |||||||| || || ||||| || Sbjct 2110 GCGTCCGTCTTCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCC 2169 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||| || || ||| ||| ||| || || || || | ||| || ||||| Sbjct 2170 CTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAA 2229 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||||||| || || || || | ||| | ||||||||| Sbjct 2230 GGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCATTTT 2274 Score = 143 bits (158), Expect = 6e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 ||| | ||| || || || |||||||||| |||||||||| ||| || | |||||||| Sbjct 1606 GACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCTTC 1665 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 | || || |||||||| || | || ||||| || || ||||||||||| |||||||| Sbjct 1666 CAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTG 1725 Query 225624 GATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCT 225682 ||| ||| || || ||| ||| ||||| || || | ||| || ||||| || || || | Sbjct 1726 GAT-TTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGTTT 1784 Query 225683 TGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || ||||| | ||| | |||||| Sbjct 1785 TTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || || ||||| | |||||||||| ||| || | |||||||| | || Sbjct 1385 TGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGTCCATCTTCCAATTGT 1444 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||||||||| | |||||||| || || ||||||||||| || ||||| || || Sbjct 1445 TTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTATCTTGAATTTTG 1504 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||| || ||||| || | ||| || ||||| || || || || || ||| Sbjct 1505 GCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAATTGTTTTTCCTGTC 1564 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | ||||| Sbjct 1565 AAGGTCTTAACGAAAATCTGCAT 1587 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||||||||| | ||| || | ||| ||||| | || || || Sbjct 1847 GTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTACCG 1906 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || | |||||||| || || || || |||||||||||||| || ||| || || Sbjct 1907 GCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTGAAT-TTTAGCTTT 1965 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || || | || || || || ||||| || ||||| ||||| || Sbjct 1966 AACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAATGT 2025 Query 225696 TTTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 2026 CTTGACAAAGATTTGCAT 2043 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| | |||||| |||||||| || | ||||| || || || ||||| |||||| Sbjct 6 CCATCTTCCAACTGCTTACCAGCGAAAATCAAACGTTGCTGATCCGGGGGAATGCCTTCC 65 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || || ||||| || ||| || ||| ||||| || || | || || || || ||| Sbjct 66 TTATCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGCTCTACTTCCAATGTG 125 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| ||||||||||| | ||| | |||||| Sbjct 126 ATAGTTTTGCCAGTCAAAGTTTTAACGAAGATTTGCAT 163 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||||||| ||||||| |||||| || | | || | ||||| || | |||| Sbjct 882 TGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGAGAGGGTGCGACCATCCTCCAACTGC 941 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || |||||||| | ||||||||||| || || ||||||||||| ||||||||||| Sbjct 942 TTACCGGCGAAGATCAAACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGGATCTT 1000 >seq125840 Length=3442 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||| ||||||| |||||| |||| ||| || | |||||||| | || || || Sbjct 734 GTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCG 675 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| | |||||||| || || ||||||||||| ||||||||||| || ||| Sbjct 674 GCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTTG 615 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||| |||||||| | | || || || || || || ||||| || || |||||| Sbjct 614 ACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGTT 555 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | ||||| Sbjct 554 TTGACGAAGATCTGCAT 538 >seq177482 Length=2829 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || ||||||||||| | |||||| |||| | || Sbjct 1648 ACGAAGGCGCAATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGGAAAGTGT 1589 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| ||||| || || | ||||| || || || ||||| || Sbjct 1588 GCGACCATCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCC 1529 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| || ||||| || ||| |||||| ||||| |||| ||| || || | Sbjct 1528 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAG 1469 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||||| ||||| | ||| | ||||| Sbjct 1468 AGTGATGGTCTTACCCGTCAGGGTTTTGACGAATATCTGCAT 1427 >seq134091 Length=1613 Score = 102 bits (112), Expect = 2e-16 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| ||||||||||| || | ||| || || ||||| |||| Sbjct 672 TTCAGGATGACCAAAAAATCAAAATAAATGTTGGTACAAGATTGGGTCTCCTCCTCCTGC 613 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||| || ||||||| ||||| ||| ||||| Sbjct 612 TGGATCAAAGAATGATGTATTAAGATTTCGATCTGTTAA 574 Score = 91.5 bits (100), Expect = 4e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 371401 ATATTAAATATCGTAGTAATAAAGTTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGA 371460 ||||||| | ||||||||||| |||| ||| |||| || ||||| || ||||| | Sbjct 458 ATATTAATAACTGTAGTAATAAAATTTACAGCTCCTAAAATTGAAGAAATTCCTGCTAAG 399 Query 371461 TGTAAACTAAATATTGCTAAATCGACGGAACCGCCGGAGTGAGCTACAATAGAACTTAAC 371520 |||||| ||| || |||| ||| || ||| | || ||||| | | ||||| ||| Sbjct 398 TGTAAAGAAAAAATAGCTAGATCAACAGAAGCTCCTCCATGAGCGATATTAGAAGATAAA 339 Query 371521 GGCGGGTAAACTGTTCAGCCGGTTC 371545 || |||||||| ||||| || |||| Sbjct 338 GGTGGGTAAACAGTTCATCCTGTTC 314 >seq68484 Length=3096 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 371413 GTAGTAATAAAGTTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAAT 371472 ||||||||||| |||| ||| |||| || ||||| || ||||| | |||||| ||| Sbjct 2805 GTAGTAATAAAATTTACAGCTCCTAAAATTGAAGAAATTCCTGCTAAGTGTAAAGAAAAA 2864 Query 371473 ATTGCTAAATCGACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACT 371532 || |||| ||| || ||| | || ||||| | | ||||| ||| || |||||||| Sbjct 2865 ATAGCTAGATCAACAGAAGCTCCTCCATGAGCGATATTAGAAGATAAAGGTGGGTAAACA 2924 Query 371533 GTTCAGCCGGTTC 371545 ||||| || |||| Sbjct 2925 GTTCATCCTGTTC 2937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1189513384271940