Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_030240.1
Length=128058
Score E
Sequences producing significant alignments: (Bits) Value
seq64788 93.3 3e-14
seq177482 82.4 6e-11
>seq64788
Length=4825
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069
|||| || ||||| | ||| |||| ||||| || ||||||||||| ||||||||||| |
Sbjct 1815 TGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAG 1874
Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129
|| || |||||||||||||| || || | || | | |||||| ||| |
Sbjct 1875 ACAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAG 1934
Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189
| | ||||| ||||| |||||| ||| |||| | | || || | | |
Sbjct 1935 GGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAA 1994
Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238
|| | ||| || |||||||| |||||||| || | ||| ||||||||
Sbjct 1995 CCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086
|| |||| ||| | ||| || || ||||||||||||||||||| || ||| | ||||
Sbjct 180 AATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCCATCT 239
Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146
||||| || || || || | || | | ||| |||||| ||| | ||||| || ||
Sbjct 240 TCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTATCC 299
Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAG 101204
|||||| ||| |||| | | || || | | ||| ||| | ||| || |
Sbjct 300 TGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATG--GTTCAACTTCCAAGGTGATGG 357
Query 101205 TTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238
||||||| ||||| || |||| ||||| |||||
Sbjct 358 TTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/219 (68%), Gaps = 12/219 (5%)
Strand=Plus/Plus
Query 101026 TAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATC 101085
||| |||| ||| | || || |||||||| || |||||||||| || || |||
Sbjct 1603 TAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATC 1662
Query 101086 TTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145
|||||||||||| || || | || | | ||||| ||| ||| | |||||||||||
Sbjct 1663 TTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTC 1722
Query 101146 GGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGAC------GGT 101199
||||| ||| |||| | | || || || || |||||| ||
Sbjct 1723 TTGGATTTTAGCTTTAACATTTTCTATGGTATC------CGATGGTTCGACCTCTAATGT 1776
Query 101200 AATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238
||| ||||| ||||| |||||||||| || ||||||||
Sbjct 1777 AATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815
>seq177482
Length=2829
Score = 82.4 bits (90), Expect = 6e-11
Identities = 92/121 (76%), Gaps = 4/121 (3%)
Strand=Plus/Minus
Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--AT 101084
|| |||| |||||| ||||||||||||||||||||||| |||| | ||| | || ||
Sbjct 1638 AATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGG--AAAGTGTGCGACCAT 1581
Query 101085 CTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGT 101144
|||||||||| || || ||| | || | | ||| || ||| || | ||||||||||
Sbjct 1580 CTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGT 1521
Query 101145 C 101145
|
Sbjct 1520 C 1520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408674683725090
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |