Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq64788 93.3 3e-14 seq177482 82.4 6e-11 >seq64788 Length=4825 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| || ||||| | ||| |||| ||||| || ||||||||||| ||||||||||| | Sbjct 1815 TGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTGTAATCAG 1874 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 || || |||||||||||||| || || | || | | |||||| ||| | Sbjct 1875 ACAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAG 1934 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | ||||| ||||| |||||| ||| |||| | | || || | | | Sbjct 1935 GGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAA 1994 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | ||| || |||||||| |||||||| || | ||| |||||||| Sbjct 1995 CCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 2043 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 || |||| ||| | ||| || || ||||||||||||||||||| || ||| | |||| Sbjct 180 AATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCCATCT 239 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 ||||| || || || || | || | | ||| |||||| ||| | ||||| || || Sbjct 240 TCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTATCC 299 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAG 101204 |||||| ||| |||| | | || || | | ||| ||| | ||| || | Sbjct 300 TGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATG--GTTCAACTTCCAAGGTGATGG 357 Query 101205 TTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||||| ||||| || |||| ||||| ||||| Sbjct 358 TTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/219 (68%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 101026 TAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATC 101085 ||| |||| ||| | || || |||||||| || |||||||||| || || ||| Sbjct 1603 TAAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATC 1662 Query 101086 TTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 |||||||||||| || || | || | | ||||| ||| ||| | ||||||||||| Sbjct 1663 TTCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTC 1722 Query 101146 GGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGAC------GGT 101199 ||||| ||| |||| | | || || || || |||||| || Sbjct 1723 TTGGATTTTAGCTTTAACATTTTCTATGGTATC------CGATGGTTCGACCTCTAATGT 1776 Query 101200 AATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| ||||| ||||| |||||||||| || |||||||| Sbjct 1777 AATTGTTTTTCCCGTTAATGTTTTAACGAATATTTGCAT 1815 >seq177482 Length=2829 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/121 (76%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--AT 101084 || |||| |||||| ||||||||||||||||||||||| |||| | ||| | || || Sbjct 1638 AATACCAAGTGCAATGTTGATTCTTTTTGAATATTGTAGTCGG--AAAGTGTGCGACCAT 1581 Query 101085 CTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGT 101144 |||||||||| || || ||| | || | | ||| || ||| || | |||||||||| Sbjct 1580 CTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGT 1521 Query 101145 C 101145 | Sbjct 1520 C 1520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408674683725090