Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq91934 217 1e-51 seq39385 82.4 7e-11 >seq91934 Length=4437 Score = 217 bits (240), Expect = 1e-51 Identities = 484/715 (68%), Gaps = 20/715 (3%) Strand=Plus/Minus Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 ||| || |||||||||||||| ||||| | ||| | || || || || ||||| || Sbjct 3571 CAAACGATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAATCAA 3512 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | || || | || | || || ||||||||||| || |||| ||||| || ||||| Sbjct 3511 ATTGACGGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTATTAT 3452 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATT-TACTAAGTATCCAAACAATAAACAC-GCA 4553 || ||||| | || | ||| || || ||| | | ||||| ||| ||| ||| Sbjct 3451 TTCGGTTATTCTCTCACG-GCTGGGACGTTGTATTAAATGTTTAAACATTAA-CACAGCA 3394 Query 4554 AAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 ||||||||||| ||||| ||||| | ||||| || || || || || | || ||| Sbjct 3393 AAATCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAGGC 3334 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCT 4673 || | ||| | || || ||||||||||| | ||||| ||| ||||| ||||| Sbjct 3333 ATAAGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAAGAAAATGCCC 3274 Query 4674 TCTACGGCGGCAAACGCTACTAATCGGG--ACCCGAACGAGCTGGCTTTGTCTTTAATCC 4731 || || |||||||| || | |||| | ||| || || | |||| ||||| Sbjct 3273 TCCACAGCGGCAAATGCAA-TAATGCGTTCACCAAAATTGGCCGATTTTGAGCC-AATCC 3216 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 | | |||||| | || || |||||| || || || | || || ||||| | Sbjct 3215 AAGACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAGA 3156 Query 4792 ATTTA---CTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTT 4848 | | | || ||| | |||| ||| || |||| || | | |||||||||| Sbjct 3155 GATAATCGCGTTGTTCGC---GATCTTTAATGTAGCTGTCGATCAAAATACTATACATTT 3099 Query 4849 CAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTT 4908 |||| |||| |||||| || ||||| || || || || || || | || ||||| |||| Sbjct 3098 CAGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACTT 3039 Query 4909 GAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 | || || | |||| | ||| || | ||||| || || ||||| || || |||| Sbjct 3038 GTACCTCTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCAGCAA 2979 Query 4969 AAAACGCCAAAACATGAGATATAAAGTA---CTGTTCGTCAGGCTTAAGTTTTTTCCAGT 5025 | || |||| |||||| || |||||||| || | ||| | | ||||||| ||||| Sbjct 2978 AGAAGGCCAGAACATGTGAGATAAAGTAACGCTCATTGTCGG---TGAGTTTTTCCCAGT 2922 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 | |||||||| | ||| |||||||| ||||||||||| || ||||| || Sbjct 2921 CCGAATTATCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGATGCTTCAGC 2867 >seq39385 Length=6125 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 5448 GTTTCTGTAAAGTAATTACCGGTCCAGTTAGACGTTCCTATGTAAGCGGTATTGTCGGTT 5507 || || ||||| |||| ||| | |||||| |||||||| || || || ||||| || ||| Sbjct 1928 GTATCGGTAAAATAATCACCCGACCAGTTTGACGTTCCAATATAGGCTGTATTATCTGTT 1987 Query 5508 ACCATATACTTCGTGTGGTTAACTCTGGTATAAGGTAT 5545 |||||||| || |||| || |||| || |||||| || Sbjct 1988 ACCATATATTTGTTGTGATTCACTCGGGCATAAGGAAT 2025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426021626220830