Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq41982 601 5e-167 seq91934 316 3e-81 >seq41982 Length=5201 Score = 601 bits (666), Expect = 5e-167 Identities = 1516/2278 (67%), Gaps = 40/2278 (2%) Strand=Plus/Minus Query 75367 CTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACC 75426 |||||||| || || || || | | | |||||||||||| | | ||| ||||| || Sbjct 3364 CTTATCCACAGTAAATTGTATAGCATTTGCTGCTGGTTTTGTCCTCAAATAATACATGCC 3305 Query 75427 AGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGG 75486 || |||| || |||| | |||||||| || || | ||| || | || Sbjct 3304 GGTCTTTAAGCCTGCTTTCCAGGCATAGAAATGAATTGAGGTCAATTTACCGTAGTTGGG 3245 Query 75487 ATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 75546 || || | ||| ||||| | |||||||||||||||||||||||| || | ||| || || Sbjct 3244 TTCAGCCACATGTATATTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCGGCTGC 3185 Query 75547 CATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATC 75606 ||||| ||| ||||||| | ||| ||||||| || || | | | ||||| Sbjct 3184 CATTTGAATAGTGGTCTTAACGGAAATCTCCCAAACTGTCTTATATAGATCACGAATATC 3125 Query 75607 ATCTGGAAGATT-TGTATT--TTGAATGGATCCGCCATCAGATATAATTGTATTCTTGAT 75663 | |||| | | ||| ||| || || |||| || || |||||| | || || || Sbjct 3124 TTTGGGAATTTCATCTATGGCTTGTATAGAGCCGCGATTGGAAATAATTCTGTTTTTCAT 3065 Query 75664 CTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTG 75723 || |||| ||| | | | || |||||| || | || | |||| |||| ||||| | Sbjct 3064 TTCGTCATCCCATAGATCACGTTCAGTTAAATCTTTTAGCAAATGATGATTGACAATATT 3005 Query 75724 AAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 75783 |||||||| || | || | || || |||||||| |||||| || || | ||||| Sbjct 3004 GAATTCTCCCGATAGCACACGTCTGGTATAAATATTGGAGGTATAAGGCTCAAATGATTC 2945 Query 75784 ATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATT 75843 ||| || ||||| ||||| || || || ||||| |||||||| |||| | ||| ||| Sbjct 2944 ATTATTGCCCAAGATTTGTGCGGTAGAGGCAGTGGGCATAGGGGCCAATAGCAAAGAATT 2885 Query 75844 TCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATG 75902 || | |||||| |||| ||||||| ||||| | | | |||| | ||| | ||| | | Sbjct 2884 TCGTACACCATGCTGTT-TGATTTTCTCTTTCAACTCTGTCCAGTTCCACAAATCGGTAG 2826 Query 75903 GTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATG 75962 | || ||| | |||||||||||| || || || || | | || ||| | Sbjct 2825 GAGTTTTATTCCACATATCGTATTGTAGTATGCCCTTACTTACCGGGCAGCCGGGATAAG 2766 Query 75963 TTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAA 76022 |||| |||| || |||||| | | ||| ||||| || || || || || ||||||| Sbjct 2765 TTTCATAAGGACCTAGCTTTTCGGACAATTCACAACTAGCTTCCAATGCGCCATAATAAA 2706 Query 76023 TTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTA 76082 | ||||||||||| | | ||| | ||| | || || | || || | | Sbjct 2705 TAGTTTCGAAAATTTGTTGATTTAACAAAGCCGCCTTTTCGCTTTCGTAGGGGAAACGCA 2646 Query 76083 AAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTAT 76142 | ||| |||| || || || ||||| || || || |||||||| | ||| | || Sbjct 2645 TTAAAATCAATGTGTCGGCAAGACCCTGCACACCTATGCCAATAGGACGATGACGTAGAT 2586 Query 76143 TGGAAATTTC--AGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 | | ||||| || || || | ||| ||| | ||||| ||||| ||||| |||||||| Sbjct 2585 T--AGATTTCCTGGCCTCCGGCAGAGGATAAAAGTTAATGTCTATGATTTTGTTGAGATT 2528 Query 76201 TCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA---TTTTCCATCTAT 76257 | || || |||||| || | |||| ||| ||| || || |||| || | Sbjct 2527 TTTGGTAATGACTTTAGTAACATTTTTTAATTTCTTAAAGTCGAATGTTTTTTCAGGCGT 2468 Query 76258 CACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGC 76317 ||||||||||||||| ||||| || || | |||||| ||||||| ||||| | || Sbjct 2467 CACAAACATATTAAGGGCTATTGAGGCCAAATTACACACGGCTATCTCATCGGGTGCGGA 2408 Query 76318 ATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTT 76377 ||| | || || ||||| || | ||||| ||||| ||||| |||| |||||| ||||| Sbjct 2407 ATACTCTACAATTTCCGTACACAAGTTACTGCACTTAATAGTGCCAATATTTTGCTGGTT 2348 Query 76378 GCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGA 76437 ||||| ||||| | ||||| || | | | ||||| || ||||| | || | Sbjct 2347 ACTCTTACGATTACAGGCATCCTTGTACAACATGTAGGGAGTACCTGTTTCTACTTGAGC 2288 Query 76438 TTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATA-GATTTGTATCGCTTCTCT 76495 ||| || || | ||| | || || || || | || | |||| | || | || Sbjct 2287 TTCAATTATGGCAAACCA-AAGAGCCTGGGCCTTGACGGTACGGTTTGCTTTGCCT-TCA 2230 Query 76496 CTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGA 76555 ||||||| | ||||| || ||| ||||| | |||||||| || | || ||||||| Sbjct 2229 TTTTCATACTTGGTATACAATTCTTCGAATTCCGCACCCCAAACTTCCTGCAGACCAGGA 2170 Query 76556 CATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGA 76615 |||| | |||||||| || ||||| || |||| ||| | || | ||||||||| | | Sbjct 2169 CATTTGTGGGGACACATTAACGACCAATCTCCATTTTCTTCTACTCTTTTCATAAACAAA 2110 Query 76616 TCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTC 76675 || |||||||| || ||| |||||||||| | ||| | ||||| || || ||||| Sbjct 2109 TCGGGTATCCACAGGGCATAGAATAGATCTCTAGCTCTGTGCTCTTCCTTGCCGGTATTT 2050 Query 76676 TTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATA 76735 || || | ||| | || || | |||||| |||||||| || || | ||| || || | Sbjct 2049 TTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATGGCAAAT 1990 Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795 | || || ||||| || || ||||||| ||| | |||| || ||| | || || Sbjct 1989 GCTCCTGGACGTTTGCCGCCGCCTTGATCTACATAGCGGGCAACATTGTTAAACACCCTA 1930 Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855 | ||| || | | || || || || || || || ||| || || | || || Sbjct 1929 AGCATGGGCACCAGTCCATTTGAGGTGCCGTTAGTACCATCGATGGAAGTGCCCTTGGCC 1870 Query 76856 CGAAT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGC 76913 | || | | | | || ||| || || || || ||| || || | || || Sbjct 1869 CTTATGCAGTGCACGTTAAT--GCCAATACCACCAGCAGATTTGGAAATCATGGCGCATT 1812 Query 76914 GTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGC 76973 ||| || || | | || || || ||| |||| ||| |||| | | ||| || || Sbjct 1811 GTTCCACTGACTTGAAAATACCTTCAATAGAATCAGCCACCATGGTCAAAAGGAAGCACG 1752 Query 76974 TAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACC 77033 |||| ||| | | || | ||| |||||| || || || ||||| || || Sbjct 1751 ATGACAATTGTGGTCGCGGGGTAGCAGCAGCAAACAAAGTGGGCGAGGCATGTGTAAAAT 1692 Query 77034 ATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTC 77093 | ||||| | | || || ||||| || | | ||||| || | ||| || | Sbjct 1691 AACGCTCAGACAACAAGTTATAAGTTTCGATGGCCGAATCTATGTCATCTCCATGTATAC 1632 Query 77094 CTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCA 77153 ||| ||| || | ||| ||||||||||| |||| ||| ||| ||||| ||| ||||||| Sbjct 1631 CTATAGCTACTCTCATTAACATATGCTGTGGTCTTTCAACAATCTTACCATTCATTTTCA 1572 Query 77154 ACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGT 77213 ||| || ||| | |||| || || || |||||||| ||||| |||||| | || | Sbjct 1571 GCAAATAGGATCTCTCCAGTGTCTTGAATCCAAAATAATTGTAGCCAAAGTCACGATCAT 1512 Query 77214 AAATAATAACCGAATT--TAGTTTGTCCTTATATTTGGTAACAATATCCATGACAGTGGT 77271 ||||||| |||||| | || | | | | || | | || ||| |||| | Sbjct 1511 AAATAATGGACGAATTCAAACGTTCTGCAT-TCTTCTGCACCA-----CATTGTAGTGAT 1458 Query 77272 A----GAAATAATTGGAGATCGTATT--CCATTTTTAGGATTAACATAGTTAAATAAGTC 77325 | ||||| || || || || || || | | | | |||||||| | | | | || Sbjct 1457 ACTCCGAAATCATGGGCGA-AGTTTTACCCGTCTCTTTG-TTAACATAATGATACAGATC 1400 Query 77326 TTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCT 77385 || || || ||||| |||||| ||||||||||| | ||| || ||||| || | Sbjct 1399 ACTTATAACCTCTGAAAATACTTTTTTCGTTTCCTTGTGCAAATTGGAGACGGCAATACG 1340 Query 77386 AGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGC 77445 ||| || | || ||||| ||| ||| | ||| || | || || ||| | || || || Sbjct 1339 AGCCGCCAATATGGCATAATCACCATGATTTGTTGTCAATGTAGCAGCTGTCTCGGCTGC 1280 Query 77446 TAAAGTATCTAATTCTATAGTAGTAACTCCGTTATAT-AGCCCTTGAATAACTTTCATGG 77504 ||| | || || ||| ||| ||||| || ||| |||| ||| |||||||||| | Sbjct 1279 CAAATTGTCCAACTCTTGAGTTGTAACACCACAGTATAAGCCATTG-ATAACTTTCAGTG 1221 Query 77505 CTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATACGAG 77564 || | || || ||||| || | || || ||||| || | ||| |||||||| Sbjct 1220 TAATGGCCACTGGGTCAACAAAATCCATATTTAATCCATAGCAAAGCTTTTGAATACGAG 1161 Query 77565 ATGTGATTTTATCAAACATG-ACATTCTCCTTACATCCATTTCGTTTAATGACGAACA 77621 |||| |||||||| || ||| || | ||| || | |||| |||||||| || |||| Sbjct 1160 ATGTAATTTTATCGAA-ATGTACTTCCTCTTTGCGGCCATCTCGTTTAAGAACAAACA 1104 >seq91934 Length=4437 Score = 316 bits (350), Expect = 3e-81 Identities = 498/704 (71%), Gaps = 13/704 (2%) Strand=Plus/Minus Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523 ||| || || ||||| ||||| ||||| || ||||||||| || || | ||||| Sbjct 3565 ATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAATCAAATTGAC 3506 Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGT 46583 || | ||| || || | |||||||||||||| | ||||| |||| |||||| || Sbjct 3505 GGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTATTATTTCGGT 3446 Query 46584 TACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAA-ACATGCAAAATCAC 46642 || | | || || || | || || ||||||||||||||||| ||| |||||||||| Sbjct 3445 TATTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAACACA-GCAAAATCAC 3387 Query 46643 AATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTC 46702 |||| | || || || | | ||| || || || || ||||| || |||||||| || | Sbjct 3386 AATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAGGCATAAGAC 3327 Query 46703 CACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAG 46762 |||| || || ||||||||||| | || ||| ||| ||||| ||||| || |||| Sbjct 3326 CACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAAGAAAATGCCCTCCACAG 3267 Query 46763 CCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA----ATCCAC--CTTT 46816 | || ||||| | || | || || || |||| ||| ||| ||||| | || Sbjct 3266 CGGCAAATGCAATAATGCGTTCACCAAAATTGGCCG-ATTTTGAGCCAATCCAAGACATT 3208 Query 46817 GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 46876 | ||||||| ||||| ||| ||| ||||| ||||| || |||||||||||| | | Sbjct 3207 G--CCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAGAGATAAT 3150 Query 46877 ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAA 46936 || || | |||||||| || | || || |||| |||||||||||| || || | Sbjct 3149 CGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATACTATACATTTCAGAGTGTA 3090 Query 46937 TGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTG 46996 ||||| || || || || || || || ||||| | ||| || |||| ||||||||| Sbjct 3089 CATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACTTGTACCTCTT 3030 Query 46997 TACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCC 47055 |||| |||||| |||| ||| ||||| || || ||||| ||||||||| || ||| Sbjct 3029 GGGAAAAACGTTCA-ACAAGATTTTCATTGACAATACCATCGGAAGCAGCAAAGAAGGCC 2971 Query 47056 AATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCT 47115 | |||||| ||||| || |||| | || ||||| | |||||| ||||| Sbjct 2970 AGAACATGTGAGATAAAGTAACGCTCATTGTCGGTGAGTTTTTCCCAGTCCGAATTATCT 2911 Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 || || | |||||||||||| | ||||| || || || || || Sbjct 2910 TTAGAGAGATCTACTTCTTCTACAGTCCAAAAAGATGCTTCAGC 2867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711174254083200