Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq64788 111 4e-19 seq125840 91.5 3e-13 >seq64788 Length=4825 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| ||||| || |||||||||| ||||| | |||||||| | Sbjct 185 CAAG-TGGAGAGTGGACTCCTTTTGAATATTGTAATCGGACAAAGTACGGCCATCTTCCA 243 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||||||||| | | |||||||| | | || |||||||| || |||| Sbjct 244 ACTGCTTACCGGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGAA 303 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| | || | | |||| || || ||||| | || || ||||||| Sbjct 304 TTTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACTTCCAAGGTGATGGTTTTGC 363 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||| | |||||| Sbjct 364 CAGTCAAGGTCTTAACGAAAATCTGCAT 391 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||||||||| |||||||| ||||||||||||| ||||| | || ||| Sbjct 2060 AGAACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCT 2119 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| || || || | || || || | | || || ||||| ||| Sbjct 2120 TCAAGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTTATCT 2179 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| |||||| | || | | || || || || || | || || || Sbjct 2180 TGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGATGGTC 2239 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || | ||||||||||||| |||||||| Sbjct 2240 TTGCCAGTTAATGTCTTCACGAAGATTTGCATTTT 2274 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | |||||| |||||||| ||||| ||||||||||||| || || | |||||||| Sbjct 1378 GACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGTCCATCTTC 1437 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||| || |||||||| | | || || || | | || ||||| || ||||| Sbjct 1438 CAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTATCTTG 1497 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| || ||| | || | |||| || || ||||| | ||||| ||||| Sbjct 1498 AATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAATTGTTTT 1557 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | ||||| ||||| | |||||| Sbjct 1558 TCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||||||||||||||||||||||| || || | |||||||| | Sbjct 1609 CAAG-TGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCTTCCA 1667 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || ||||| || | | ||| || || | | || ||||| || ||||| | Sbjct 1668 ATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGA 1727 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| | |||| | | || || || || || | ||||| ||||| | Sbjct 1728 TTTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGTTTTTC 1787 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | || || ||||| | ||||| Sbjct 1788 CCGTTAATGTTTTAACGAATATTTGCAT 1815 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| |||||||| || |||||||| | || || | ||| ||||| | ||| ||| Sbjct 1847 GTAGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTACCG 1906 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | | || || || | | |||||||||||| ||||||||||| ||| Sbjct 1907 GCGAAAATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTA 1966 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || ||| ||| || || | || || |||||||| || | ||| Sbjct 1967 ACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAATGTC 2026 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 2027 TTGACAAAGATTTGCAT 2043 >seq125840 Length=3442 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | || || || |||||||| ||||| |||| || || | ||||| Sbjct 750 GAGTACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAGTCGGACAAGGTGCGACCATC 691 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| | ||| ||||||||||| | | || || || | | || ||||| || || Sbjct 690 TTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTC 631 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| ||||| |||||| | || | | |||| || ||| ||||| | ||||| || Sbjct 630 TTGGATTTTAGCCTTGACATTTTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGT 571 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||| || ||||||| |||||| Sbjct 570 CTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150900944689210