Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq91934 242 4e-59 seq39385 87.8 2e-12 >seq91934 Length=4437 Score = 242 bits (268), Expect = 4e-59 Identities = 478/696 (69%), Gaps = 16/696 (2%) Strand=Plus/Minus Query 23343 ATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTAC 23402 ||| ||||||||||||||||||| ||||||| | | | || || || || | || || Sbjct 3565 ATCAGCTACAAATTCAATATATTCCGACATCAATTTACAATTCATGCCAATCAAATTGAC 3506 Query 23403 TGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAAC 23462 || | || || |||||| || |||||| ||||| || | ||||||| | Sbjct 3505 GGGCAAAGCTTCGGTTAAGAACTCTTGTTCAATTTTTACAGCTTCCGTTATTATTT---C 3449 Query 23463 AATAACTTCT-TCAC---TAGGTGGATATTTTAAATACTTAAACAATAA-ACATGCAAAA 23517 | | |||| |||| | || | | | |||||| ||||||| ||| ||| |||||| Sbjct 3448 GGTTA-TTCTCTCACGGCTGGGACGTTGTATTAAATGTTTAAACATTAACACA-GCAAAA 3391 Query 23518 TCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATT 23577 |||||||||| || || || | | |||||| ||||| || ||||| | || ||||| Sbjct 3390 TCACAATGTAAACCCTCGTCACGAGAAATCAACTCATTGGAGAATGTAAGGCCAGGCATA 3331 Query 23578 AATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCA 23637 | || ||||| || | ||||||||| | |||||| || |||||||| ||||| Sbjct 3330 AGACCACGTTTCTTTAGCCAAAATATCGAAGCAAAACTGCCACTGAAGAAAATGCCCTCC 3271 Query 23638 ACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGC--ATTATAATCAGAAATCCAtt 23695 ||||| ||||| || | || ||| |||||| | || ||| | | | |||||| Sbjct 3270 ACAGCGGCAAATGCAATAATGCGTTCACCAAAATTGGCCGATTTTGAGCC--AATCCAAG 3213 Query 23696 tttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAA 23755 ||| ||||| ||||| || ||| || |||||||| || || |||||| Sbjct 3212 ACATTGCCCAATCGGCCTTGCGCTTAACAGCTGGCATCGTTTCAATGGCATTAAAGAGAT 3153 Query 23756 AAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAAT 23815 || || ||| |||| | || || | || || | | ||||||||||||||| | Sbjct 3152 AATCGCGTTGTTCGCGATCTTTAATGTAGCTGTCGATCAAAATACTATACATTTCAGAGT 3093 Query 23816 GAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACAT 23875 | | |||||| || ||||| || || ||||| ||||| | || || | | ||| || | Sbjct 3092 GTACATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGTGCCTCTGTAACTTGTACCT 3033 Query 23876 CATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAG 23935 | | |||| | || | | | |||||| || ||||||||||| |||||||||||| | Sbjct 3032 CTTGGGAAAAACGTTCAACAAGATTTTCATTGACAATACCATCGGAAGCAGCAAAGAAGG 2973 Query 23936 CAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT-AATTTTTTCCAATCATTAATA 23994 | ||||||| | ||||| | | |||| || | | | ||||| ||| || | || Sbjct 2972 CCAGAACATGTGAGATAAAGTAACGCTCAT-TGTCGGTGAGTTTTTCCCAGTCCGAATTA 2914 Query 23995 TCTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030 ||||| || | ||| ||||| || || ||||||||| Sbjct 2913 TCTTTAGAGAGATCTACTTCTTCTACAGTCCAAAAA 2878 >seq39385 Length=6125 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 139428 AGGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGC 139487 |||||| |||| ||||||||||||||| || |||||||| || ||| | || ||||| Sbjct 2662 AGGTGTTTTACACACAAAATTTTGGATTTCGGACAATAAACACATTTATCTGGGCAGTGC 2603 Query 139488 TAACATGGACTGGCGATCACTAACTCAAGTAAAAGA 139523 || ||||||||| |||| |||| ||||| ||||| Sbjct 2602 AAATATGGACTGGAGATCTTTAACCCAAGTCAAAGA 2567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520200511314000