Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01]
197,510 sequences; 459,231,066 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq64788 125 5e-24
seq125840 91.5 1e-13
>seq64788
Length=4825
Score = 125 bits (138), Expect = 5e-24
Identities = 168/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | || | |||||||| ||||| ||| ||||||||||| |||||
Sbjct 1126 TTGCATACCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTA 1185
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | ||| ||| | || |||| |||||| ||||| ||||||||||| || || ||
Sbjct 1186 GTCAGAGAGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTC 1245
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| ||| | ||||||||| || ||||| ||| | || | ||||| || | |
Sbjct 1246 TGGAGGGATACCTTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGG 1305
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| ||||||| || || || ||||| || | || |||||||| || |||||
Sbjct 1306 TTCTACCTCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359
Score = 114 bits (126), Expect = 9e-21
Identities = 168/235 (71%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | || | ||| |||| ||| || ||| ||||||||| || |||||
Sbjct 158 TTGCATGCCACCACGGAGACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTA 217
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
||||| | || | || |||| |||||| ||||| ||||||||||| ||||| ||
Sbjct 218 ATCGGACAAAGTACGGCCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTC 277
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGTTCCTATGGTGTCGGCGG 44282
|| || | ||||||||| ||| | | || |||| || || | |||||||| | |
Sbjct 278 TGGGGGAATACCTTCCTTATCC-TGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATG 336
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || |||| || || || || || || | |||||| ||||| || |||||
Sbjct 337 GTTCAACTTCCAAGGTGATGGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185
|| |||| |||||| || ||| ||||||||||||||||||| | | || | ||
Sbjct 1604 AAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCT 1663
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|||| || || || || || || |||||||| ||||||| || | |||||| || ||
Sbjct 1664 TCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCT 1723
Query 44246 GTTATCTTCTGCTTCAA-TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
|| || |||| || || ||||||| || | | ||| ||||| | ||||| ||
Sbjct 1724 TGGAT-TTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGT 1782
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|||||||| | || || ||||| |||||||||
Sbjct 1783 TTTTCCCGTTAATGTTTTAACGAATATTTGCATG 1816
Score = 96.9 bits (106), Expect = 2e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | || | |||||||| ||||| ||| ||||||||||| |||||
Sbjct 851 TTGCATACCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTA 910
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | ||| ||| | || |||| |||||| ||||| ||||||||||| || || ||
Sbjct 911 GTCAGAGAGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTC 970
Query 44224 TGAAGGCACACCTTCCTTTTC 44244
|| ||| | ||||||||| ||
Sbjct 971 TGGAGGGATACCTTCCTTATC 991
Score = 95.1 bits (104), Expect = 9e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185
|| |||| ||||| || ||||||||| ||||||||||||| | | || | ||
Sbjct 1376 AAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGTCCATCT 1435
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|||| || || || || ||||| ||||| || ||||||| || | |||||| || ||
Sbjct 1436 TCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTATCT 1495
Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
|| || ||| | || | || ||||||| | ||| || || | ||||| ||
Sbjct 1496 TGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAATTGTT 1555
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || | |||||| ||||| || |||||
Sbjct 1556 TTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587
Score = 87.8 bits (96), Expect = 1e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
|| ||||| || |||||||| | | | |||| |||| |||| || || ||||| ||
Sbjct 1853 TCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAA 1912
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
|||||||| || ||||||| ||| | |||||||| || || || |||| || ||
Sbjct 1913 ATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTA-GCTTTAACATT 1971
Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || || |||| | || ||||||| || || || || || || | ||||| ||
Sbjct 1972 TTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGAC 2031
Query 44326 GAAGATTTGCAT 44337
|||||||||||
Sbjct 2032 AAAGATTTGCAT 2043
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||||| || || ||||| ||||||||||||| | ||| |||| ||
Sbjct 2063 ACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCA 2122
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| || || |||||||| || | ||| || ||||||| || | || ||||| ||
Sbjct 2123 AGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTTATCTTGA 2182
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|| || ||| | || | || || || | | ||| ||||| | || || |||||
Sbjct 2183 ATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGATGGTCTTG 2242
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | ||||||||||||||||||||
Sbjct 2243 CCAGTTAATGTCTTCACGAAGATTTGCAT 2271
>seq125840
Length=3442
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||||||||||| ||||| |||| | || || || | || |||| || || ||||| ||
Sbjct 728 TCCTTTTGGATATTGTAGTCGGACAAGGTG-CGACCATCTTCCAATTGTTTACCGGCGAA 670
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
||||||||| || ||||||| || | |||||| || || || || ||| | |
Sbjct 669 GATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATT 610
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| | ||||||||| | || || |||| ||||| ||||| || || | || || ||
Sbjct 609 TTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGAC 550
Query 44326 GAAGATTTGCAT 44337
|||||| |||||
Sbjct 549 GAAGATCTGCAT 538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359123847983670
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |