Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq64788 125 5e-24 seq125840 91.5 1e-13 >seq64788 Length=4825 Score = 125 bits (138), Expect = 5e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | |||||||| ||||| ||| ||||||||||| ||||| Sbjct 1126 TTGCATACCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTA 1185 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| ||| | || |||| |||||| ||||| ||||||||||| || || || Sbjct 1186 GTCAGAGAGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTC 1245 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | ||||||||| || ||||| ||| | || | ||||| || | | Sbjct 1246 TGGAGGGATACCTTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGG 1305 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||| || || || ||||| || | || |||||||| || ||||| Sbjct 1306 TTCTACCTCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAAATCTGCAT 1359 Score = 114 bits (126), Expect = 9e-21 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| ||| || ||| ||||||||| || ||||| Sbjct 158 TTGCATGCCACCACGGAGACGCAATACCAAGTGGAGAGTGGACTCCTTTTGAATATTGTA 217 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| | || | || |||| |||||| ||||| ||||||||||| ||||| || Sbjct 218 ATCGGACAAAGTACGGCCATCTTCCAACTGCTTACCGGCGAAGATCAAACGTTGCTGGTC 277 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGTTCCTATGGTGTCGGCGG 44282 || || | ||||||||| ||| | | || |||| || || | |||||||| | | Sbjct 278 TGGGGGAATACCTTCCTTATCC-TGAATTTTAGCTTTAACATTTTCAATGGTGTCAGATG 336 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || || || || || || | |||||| ||||| || ||||| Sbjct 337 GTTCAACTTCCAAGGTGATGGTTTTGCCAGTCAAGGTCTTAACGAAAATCTGCAT 391 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || |||| |||||| || ||| ||||||||||||||||||| | | || | || Sbjct 1604 AAGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCT 1663 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| || || || || || || |||||||| ||||||| || | |||||| || || Sbjct 1664 TCCAATTGTTTACCAGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCT 1723 Query 44246 GTTATCTTCTGCTTCAA-TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 || || |||| || || ||||||| || | | ||| ||||| | ||||| || Sbjct 1724 TGGAT-TTTAGCTTTAACATTTTCTATGGTATCCGATGGTTCGACCTCTAATGTAATTGT 1782 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| | || || ||||| ||||||||| Sbjct 1783 TTTTCCCGTTAATGTTTTAACGAATATTTGCATG 1816 Score = 96.9 bits (106), Expect = 2e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | |||||||| ||||| ||| ||||||||||| ||||| Sbjct 851 TTGCATACCACCGCGGAGACGCAACACCAAATGAAGGGTGGATTCCTTTTGGATATTGTA 910 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| ||| | || |||| |||||| ||||| ||||||||||| || || || Sbjct 911 GTCAGAGAGGGTGCGACCATCCTCCAACTGCTTACCGGCGAAGATCAAACGTTGTTGGTC 970 Query 44224 TGAAGGCACACCTTCCTTTTC 44244 || ||| | ||||||||| || Sbjct 971 TGGAGGGATACCTTCCTTATC 991 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || |||| ||||| || ||||||||| ||||||||||||| | | || | || Sbjct 1376 AAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGACAATGTACGTCCATCT 1435 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| || || || || ||||| ||||| || ||||||| || | |||||| || || Sbjct 1436 TCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTATCT 1495 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || ||| | || | || ||||||| | ||| || || | ||||| || Sbjct 1496 TGAATTTTGGCCTTTACATTTTCAATAGTGTCGGATGGTTCAACTTCTAAGGTAATTGTT 1555 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | |||||| ||||| || ||||| Sbjct 1556 TTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 1587 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || ||||| || |||||||| | | | |||| |||| |||| || || ||||| || Sbjct 1853 TCTTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTACCGGCGAAA 1912 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| || ||||||| ||| | |||||||| || || || |||| || || Sbjct 1913 ATCAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTA-GCTTTAACATT 1971 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || || |||| | || ||||||| || || || || || || | ||||| || Sbjct 1972 TTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGAC 2031 Query 44326 GAAGATTTGCAT 44337 ||||||||||| Sbjct 2032 AAAGATTTGCAT 2043 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| || || ||||| ||||||||||||| | ||| |||| || Sbjct 2063 ACCAAATGAAGAGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCA 2122 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || |||||||| || | ||| || ||||||| || | || ||||| || Sbjct 2123 AGTTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATGCCCTCCTTATCTTGA 2182 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||| | || | || || || | | ||| ||||| | || || ||||| Sbjct 2183 ATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCGACCTCTAAGGTGATGGTCTTG 2242 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||||||||||||||||| Sbjct 2243 CCAGTTAATGTCTTCACGAAGATTTGCAT 2271 >seq125840 Length=3442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||||| ||||| |||| | || || || | || |||| || || ||||| || Sbjct 728 TCCTTTTGGATATTGTAGTCGGACAAGGTG-CGACCATCTTCCAATTGTTTACCGGCGAA 670 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||||||| || ||||||| || | |||||| || || || || ||| | | Sbjct 669 GATCAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATT 610 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | ||||||||| | || || |||| ||||| ||||| || || | || || || Sbjct 609 TTCAATGGTGTCGTAAGGCTCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGAC 550 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 549 GAAGATCTGCAT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359123847983670