Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calliphora_20vicina_20[genbank_20GCA_5F001017275.1_202015-06-01] 197,510 sequences; 459,231,066 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq177482 154 4e-32 seq64788 141 2e-28 seq125840 102 2e-16 >seq177482 Length=2829 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || || || ||||| || ||||| ||| ||| ||| Sbjct 1430 CAGATATTCGTCAAAACCCTGACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCGGAC 1489 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||||||||||||||||||||| || || || |||||| Sbjct 1490 ACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAGCAA 1549 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| || | |||||||| | || ||| |||| || || | Sbjct 1550 CGTTTGATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACACTTTCCGACTACAATATT 1609 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||||||| |||| |||| Sbjct 1610 CAAAAAGAATCAACATTGCA-CTTG 1633 >seq64788 Length=4825 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | || |||||||| |||||| | ||||| ||| ||||| Sbjct 1356 CAGATTTTCGTGAAAACGTTGACTGGAAAAACCATCACCTTGGAGGTAGAACCATCAGAT 1297 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || || || ||||| |||||||| ||||| ||| Sbjct 1296 ACCATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCTCCAGACCAACAA 1237 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||| | || ||||| | || || | || || || || Sbjct 1236 CGTTTGATCTTCGCCGGTAAGCAGTTGGAGGATGGTCGCACCCTCTCTGACTACAATATC 1177 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| ||||| || || ||| | || ||| | ||| Sbjct 1176 CAAAAGGAATCCACCCTTCATTTGGTGTTGCGTCTC 1141 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || || ||||| |||||| | || || ||| || ||| Sbjct 388 CAGATTTTCGTTAAGACCTTGACTGGCAAAACCATCACCTTGGAAGTTGAACCATCTGAC 329 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || |||||||| || ||||| || || || ||||||||| Sbjct 328 ACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAGGAAGGTATTCCCCCAGACCAGCAA 269 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||| | |||||||| | ||| | ||||||| || | Sbjct 268 CGTTTGATCTTCGCCGGTAAGCAGTTGGAAGATGGCCGTACTTTGTCCGATTACAATATT 209 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| || || || || || | || ||| | ||| Sbjct 208 CAAAAGGAGTCCACTCTCCACTTGGTATTGCGTCTC 173 Score = 118 bits (130), Expect = 3e-21 Identities = 156/216 (72%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| |||||||| || | || || || || |||||| | ||||| ||| Sbjct 2274 AAAATGC---AAATCTTCGTGAAGACATTAACTGGCAAGACCATCACCTTAGAGGTCGAA 2218 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || ||||| || ||||| || || || || || || || Sbjct 2217 CCATCTGATACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCCCCA 2158 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| || || || ||||| ||||| || ||||| ||| | ||| | ||||| Sbjct 2157 GATCAACAACGTCTAATTTTTGCCGGTAAACAACTTGAAGACGGACGCACTTTGTCCGAT 2098 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || ||| | ||||||||||| || || ||| | ||| Sbjct 2097 TACAACATTCAAAAAGAATCTACTCTTCATTTGGTT 2062 Score = 114 bits (126), Expect = 3e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || |||||||| || || | ||||| ||| || || Sbjct 1812 CAAATATTCGTTAAAACATTAACGGGAAAAACAATTACATTAGAGGTCGAACCATCGGAT 1753 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || || || ||||||||||| || || || || || || Sbjct 1752 ACCATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAACAG 1693 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || ||||| | ||||||||| | || | ||||||| ||| || Sbjct 1692 CGTTTAATTTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAACATC 1633 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| || || || || |||| Sbjct 1632 CAAAAAGAGTCGACCCTTCA-CTTG 1609 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | ||||||||||| || ||| | || || ||| || ||| Sbjct 1584 CAGATTTTCGTTAAGACCTTGACAGGAAAAACAATTACCTTAGAAGTTGAACCATCCGAC 1525 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| || |||||||| || || || || || ||| Sbjct 1524 ACTATTGAAAATGTAAAGGCCAAAATTCAAGATAAAGAAGGTATTCCCCCAGATCAACAA 1465 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | ||||||||| | || | ||||||| ||| | Sbjct 1464 CGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAACATT 1405 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||| || || || || ||| | || || Sbjct 1404 CAAAAGGAGTCTACCCTTCATTTGGTCTT 1376 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || ||||| |||||| | ||||| || || || Sbjct 2040 CAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCTTCCGAT 1981 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| ||||| |||||||||||||| || || ||| Sbjct 1980 ACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCAACAA 1921 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| ||||| | ||||| || | || | | ||||| || | Sbjct 1920 CGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAATATA 1861 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||||||||| ||| ||||| | || || Sbjct 1860 CAAAAAGAATCTACATTGCATTTGGTATT 1832 Score = 86.0 bits (94), Expect = 2e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || || || ||||| |||||||| ||||| ||||| | ||||||||||| || Sbjct 1000 AAGATCCAAGATAAGGAAGGTATCCCTCCAGACCAACAACGTTTGATCTTCGCCGGTAAG 941 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | || ||||| | || || | || || || ||||||| ||||| || || ||| Sbjct 940 CAGTTGGAGGATGGTCGCACCCTCTCTGACTACAATATCCAAAAGGAATCCACCCTTCAT 881 Query 178125 CTTGTTTTGAGACTC 178139 | || ||| | ||| Sbjct 880 TTGGTGTTGCGTCTC 866 >seq125840 Length=3442 Score = 102 bits (112), Expect = 2e-16 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||| | || || || || || ||| | || || || | ||| Sbjct 541 CAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTCGAGCCTTACGAC 600 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| || || || ||||||||||| || || || || || ||| Sbjct 601 ACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAACAA 660 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||||||||| ||||| | |||||||| | || |||| |||| || || | Sbjct 661 CGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCAC-CTTGTCCGACTACAATAT 719 Query 178103 CCAAAAAGAATCAAC 178117 |||||| ||||| || Sbjct 720 CCAAAAGGAATCCAC 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200685041586940