Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calopteryx_20splendens_20[genbank_20GCA_5F002093875.1_202017-04-14] 8,896 sequences; 1,628,352,544 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3317 138 2e-27 seq506 100 4e-16 seq4229 95.1 2e-14 seq2870 84.2 3e-11 >seq3317 Length=93551 Score = 138 bits (152), Expect = 2e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || ||||| || || || ||| |||| | ||| || Sbjct 67179 AATGCAAATCTTTGTGAAAACTCTGACAGGAAAGACAATTACTTTAGAAGTCGAATCATC 67120 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| |||||| ||| | || ||||||||||||||||||||||| || || ||||| Sbjct 67119 TGACACAATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGTATTCCTCCCGATCA 67060 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | |||||||| ||||| ||||||||||||| |||||| || ||||| || Sbjct 67059 ACAACGCTTAATTTTTGCTGGAAAGCAATTAGAGGATAATCGAACTTTGTCCGATTACAA 67000 Query 124718 TATTCAAAAAG 124728 || || |||| Sbjct 66999 CATACAGAAAG 66989 >seq506 Length=757308 Score = 100 bits (110), Expect = 4e-16 Identities = 258/384 (67%), Gaps = 22/384 (6%) Strand=Plus/Minus Query 59612 ACTTTTAAATTTATTTAATGAATGTTGGAAATATaaaaaaaTAC---CAGATGAGTGGTT 59668 ||||||| || |||||||||||| |||||| ||||||| |||| |||| || ||| Sbjct 746020 ACTTTTACATATATTTAATGAATATTGGAAGAATAAAAAGATACCAACAGAAGAATGGAG 745961 Query 59669 AATATCtaaaattaaatcaatacataaaaatggagataaaaatatttgtaataattatag 59728 || | ||| | ||| | || ||||| ||||| |||| || || || | ||| Sbjct 745960 AAGAGTAAAAGTGAAACCCATTTTCAAAAAATTTGATAAGAATAACTGCAAAAACTGTAG 745901 Query 59729 aggtataaatttaataaattGGGCATGTAAATTGTATTCAAAAATTTTAAATAATAGA-T 59787 ||| |||| | || | | || | ||| | || | | ||||| || || ||| | Sbjct 745900 AGGAATAAGCCTCTTAGACTCAGCTTACAAAATCTAGGCTTAGATTTTGAACAACAGACT 745841 Query 59788 TAAAACCAATAATGGAAAATTTAATTTCAGAAGAACAATCCGGTTTTagaaaaaatagat 59847 ||||||| || |||||| | |||||| ||||| ||| |||||||||| | Sbjct 745840 TAAAACC-ATCATGGAAGAGTTAATTGTGGAAGAGCAAATGAGTTTTAGAAA----GGGG 745786 Query 59848 ctattaaagat-aat---atatatatactacatgaaa-taattagaaata----gaa--- 59895 || | || || ||| || | || || || ||| || | | ||||| ||| Sbjct 745785 CTGTCAACCATCAATGGAATTTTTAATCTCCAACAAAGTATTGAAAAATATAGCGAATTT 745726 Query 59896 aaaaGG-AAACATATTTTGCATTTATTGATTTTAAAAAAGCATTTGATAATGTTGATAGA 59954 || ||| |||| |||||| ||| ||||||||| ||||||| ||||||| || | ||| Sbjct 745725 AATAGGAAAACCCATTTTGTATTCATTGATTTTTAAAAAGCTTTTGATAGTGCCAACAGA 745666 Query 59955 GAAATTTTATGGAATATAATGCAT 59978 || | | ||||| || ||| || Sbjct 745665 GAGAAAATGTGGAACATTATGTAT 745642 >seq4229 Length=101839 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 || ||||||||||||||||| || ||||||| || |||||| | || Sbjct 12339 CCGACATATCCATTTGGATCTCGACCATCTAGGCTGTAGCGATCATTAAGATAAATGGAA 12280 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 ||||| |||||||| || || ||| || || || || || |||||||||||| Sbjct 12279 ATTGATAATGCCTCTTCTGGACTTTCTGACCACTCCAAAATCTTCTTTGCCCAATACATT 12220 Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAA 203047 | | | | ||||||||||| || | | || | ||| |||| ||||||||||| | | Sbjct 12219 CGAAGAAAACCATGCATTTTCCCCTCTTTCATTAATTGGATTTGAGATGCATTCCAGAGA 12160 Query 203048 TTGTCATGAGTTAATGCATTTTCAAGTTGA 203077 | ||||| ||| |||| |||| |||| Sbjct 12159 TCATCATGGGTTCGTGCAGCCTCAAATTGA 12130 >seq2870 Length=135571 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || || || || ||||| || || | || | || | Sbjct 19760 AATGCAGATTTTCGTGAAAACGCTCACGGGTAAAACGATTACCCTGGAAGTGGAGCCCTC 19819 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| |||||| ||| | ||| || ||||| ||||| ||||| || || || ||||| Sbjct 19820 TGACACAATTGAAAATGTGAAAGCCAAGATTCAGGATAAGGAAGGAATTCCTCCAGATCA 19879 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| || || ||||| || ||| | || || | || || || Sbjct 19880 GCAGAGGCTTATATTTGCTGGGAAGCAATTGGAAGATGGGCGCACGCTCTCTGACTACAA 19939 Query 124718 TATTCAAAAAG 124728 ||||||||||| Sbjct 19940 TATTCAAAAAG 19950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755371993292800